F28341

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28341

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
T2  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28341

Determination of introduced cDNA(s)

  • RAFL09-62-H09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-62-H09 - Resource: pda09870

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-62-H09 - full reading
    TTACATTTTT CTGTTGAATC CAACTATGTT TAGATTGAGA AGTCTCTTGT 
    CGCTGAAGAG TTCTTCGATT GTAGAATTGT CATCACAAAA CGTCACAGAA
    GCAATTCGTT TCGCTCCATT TCATTCGACA AGTGTTCTGT CTGAAAAATC
    GAGGAGTAGA TTTGGTTCTG CTAGAGATTC CGAAGGCGAA CGATCTTCAA
    AGAACTCCTC CATAAGATTT ACATGTACCG TAAAGGAGAA GGGTCGTACC
    AGTGCTAAGA AGACTGTGGA TAAACTCCTT TTCCACAGGG GAATTAATGA
    TCCGCTTCAG AATGAGTGGC ATTTCGGGCC AAGTCCGCTT ATCCGGGATA
    GGCATATGAA GAAAAAATCT CCGCCTGGCA GGGGAAAGAA GCCTCGAGAT
    AAGAAAACAA AACGATGGCA CAGAGAAGGT AATCCGGACG ATGATTTTGG
    CACTGATGCT AATAATACAT TCGAGAACAA ATGGAGAGAA CGCTGGACAG
    CTCAATCTCA GAAGGCTTCA TATTCGAAAG ACTCGACAGC GGGATTTGAA
    TGGAGAGAAG GCTGGAGCTG GACCACTCAA TCTCAGAGGA GCAAAAGTTG
    GAATAAAGAG TCTTTTGATG AACCTTTGAA CGTTGAGTTT AGGTCTGAGA
    GGATTGTTCT AGGATTGCCT CTTGATGGTC CCATCAAGGT TGATGATGTT
    AAGAATGCCT TCCGATCTTC TGCGTTGAAG TGGCATCCAG ATAAGCACCA
    GGGGCCTTCT CAGGTGGCAG CGCAAGAGAA ATTCAAACTC TGTGTTGATG
    CATACAAGTC CCTCTGTTCT GCACTCGCTT GACGTTACAC ATAGGCATTG
    ATGCACCATT TTAGCATTAG TTGATAAGGC TGCTTCTGAA ACGTTTTCGA
    GAGATACACC GGTTTTTAGA TGATGGGTTT GATTTGGTTC ATGAGAATCC
    ACCAGCTACA AGATTGCACA CGGCACACCA ATGTGTCTCT CGTCCTTTTC
    CAACATTTGA TAACAAAAAC ATGTATGTGA AAGATTTATG CTAGTGCCCA

    Gene models with high sequence identity

    1. AT2G18465.1 [+] show detail - Chaperone DnaJ-domain superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Heat shock protein DnaJ, N-terminal 3.9e-07
    HMMPfam Heat shock protein DnaJ, N-terminal 3.3e-09
    HMMPanther DNAJ HOMOLOG SUBFAMILY B MEMBER 2, 6, 8, 10 1.6e-06
    HMMPanther Molecular chaperone, heat shock protein, Hsp40, DnaJ 1.6e-06
    ProfileScan Heat shock protein DnaJ, N-terminal 9.738
    Gene3D Heat shock protein DnaJ, N-terminal 0.00093
    superfamily Heat shock protein DnaJ, N-terminal 1.6e-09

    See the detailed result >

    AT2G18465.1

    Model type
    Protein coding
    Short Description
    Chaperone DnaJ-domain superfamily protein
    Computational Description
    Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT2G42080.1); Has 909 Blast hits to 907 proteins in 206 species: Archae - 6; Bacteria - 183; Metazoa - 307; Fungi - 24; Plants - 167; Viruses - 0; Other Eukaryotes - 222 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR