F28341

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	dark green (PATO:0001249) (Rosette leaf::Color::dark) abnormal (PATO:0000460) (Rosette leaf::Others)
	fruit (PO:0009001)	abnormal (PATO:0000460) (Silique::Others)
	stem (PO:0009047)	present in fewer numbers in organism (PATO:0001997) (Stem::Number::few) abnormal (PATO:0000460) (Stem::Shape::zigzag)
T2
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small)
	rosette leaf (PO:0000014)	dark green (PATO:0001249) (Rosette leaf::Color::dark) increased width (PATO:0000600) (Rosette leaf::Shape::wide) abnormal (PATO:0000460) (Rosette leaf::Others)
	fruit (PO:0009001)	abnormal (PATO:0000460) (Silique::Others)
	stem (PO:0009047)	present in fewer numbers in organism (PATO:0001997) (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28341

Determination of introduced cDNA(s)

RAFL09-62-H09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-62-H09 - Resource: pda09870

full reading [+] show sequence

TTACATTTTT CTGTTGAATC CAACTATGTT TAGATTGAGA AGTCTCTTGT 
CGCTGAAGAG TTCTTCGATT GTAGAATTGT CATCACAAAA CGTCACAGAA 
GCAATTCGTT TCGCTCCATT TCATTCGACA AGTGTTCTGT CTGAAAAATC 
GAGGAGTAGA TTTGGTTCTG CTAGAGATTC CGAAGGCGAA CGATCTTCAA 
AGAACTCCTC CATAAGATTT ACATGTACCG TAAAGGAGAA GGGTCGTACC 
AGTGCTAAGA AGACTGTGGA TAAACTCCTT TTCCACAGGG GAATTAATGA 
TCCGCTTCAG AATGAGTGGC ATTTCGGGCC AAGTCCGCTT ATCCGGGATA 
GGCATATGAA GAAAAAATCT CCGCCTGGCA GGGGAAAGAA GCCTCGAGAT 
AAGAAAACAA AACGATGGCA CAGAGAAGGT AATCCGGACG ATGATTTTGG 
CACTGATGCT AATAATACAT TCGAGAACAA ATGGAGAGAA CGCTGGACAG 
CTCAATCTCA GAAGGCTTCA TATTCGAAAG ACTCGACAGC GGGATTTGAA 
TGGAGAGAAG GCTGGAGCTG GACCACTCAA TCTCAGAGGA GCAAAAGTTG 
GAATAAAGAG TCTTTTGATG AACCTTTGAA CGTTGAGTTT AGGTCTGAGA 
GGATTGTTCT AGGATTGCCT CTTGATGGTC CCATCAAGGT TGATGATGTT 
AAGAATGCCT TCCGATCTTC TGCGTTGAAG TGGCATCCAG ATAAGCACCA 
GGGGCCTTCT CAGGTGGCAG CGCAAGAGAA ATTCAAACTC TGTGTTGATG 
CATACAAGTC CCTCTGTTCT GCACTCGCTT GACGTTACAC ATAGGCATTG 
ATGCACCATT TTAGCATTAG TTGATAAGGC TGCTTCTGAA ACGTTTTCGA 
GAGATACACC GGTTTTTAGA TGATGGGTTT GATTTGGTTC ATGAGAATCC 
ACCAGCTACA AGATTGCACA CGGCACACCA ATGTGTCTCT CGTCCTTTTC 
CAACATTTGA TAACAAAAAC ATGTATGTGA AAGATTTATG CTAGTGCCCA

Gene models with high sequence identity

AT2G18465.1 [+] show detail - Chaperone DnaJ-domain superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	Heat shock protein DnaJ, N-terminal	3.9e-07
HMMPfam	Heat shock protein DnaJ, N-terminal	3.3e-09
HMMPanther	DNAJ HOMOLOG SUBFAMILY B MEMBER 2, 6, 8, 10	1.6e-06
HMMPanther	Molecular chaperone, heat shock protein, Hsp40, DnaJ	1.6e-06
ProfileScan	Heat shock protein DnaJ, N-terminal	9.738
Gene3D	Heat shock protein DnaJ, N-terminal	0.00093
superfamily	Heat shock protein DnaJ, N-terminal	1.6e-09

See the detailed result >

AT2G18465.1

Model type: Protein coding
Short Description: Chaperone DnaJ-domain superfamily protein
Computational Description: Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT2G42080.1); Has 909 Blast hits to 907 proteins in 206 species: Archae - 6; Bacteria - 183; Metazoa - 307; Fungi - 24; Plants - 167; Viruses - 0; Other Eukaryotes - 222 (source: NCBI BLink).
Link: InterPro Scan - TAIR