F28343

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28343

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Original: F28343

Determination of introduced cDNA(s)

  • RAFL11-01-D24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL11-01-D24 - Resource: pda02166

    full reading [+] show sequence

    Nucleotide sequence: RAFL11-01-D24 - full reading 
    AACTAACACA CTAAGGTTTT CTTACAACCC TCGCAACTCT ATTTAAACAT 
    TTATCTTGTG ACGTTTCACA TAACAAGATA TATCTACAAT AACCCCAAGA 
    AATTTAACAG AATGAAAGTA ATTACTTCCC TAATCTCTTC TATTTTGCTT 
    AAATTCATCC ACAAAGACTT CCATGAGATT TATGCAAGAA TGTCCCTCCT 
    CGATCGGTTT CTTCTTCTTA TCGTGCATGG AGTGGATAAG ATGGTTCCAT 
    GGCATAAGCT TCCAGTATTC TTGGGGTTAA CCTATCTTGA AGTACGAAGA 
    CATCTTCACC AACAATACAA TCTTCTCAAC GTCGGTCAAA CTCCGACTGG 
    GATCCGGTTT GATCCTGCTA ATTATCCGTA CCGGACTGCT GACGGAAAAT 
    TCAATGATCC CTTTAATGAA GGCGTCGGCA GTCAAAATAG TTTTTTCGGG 
    AGAAATTGTC CCCCCGTCGA TCAGAAATCA AAGTTACGGA GGCCAGACCC 
    CATGGTGGTG GCGACAAAAC TATTAGGAAG GAAAAAGTTT ATCGACACGG 
    GAAAACAATT CAACATGATT GCAGCTTCTT GGATTCAGTT CATGATCCAT 
    GATTGGATTG ATCATCTTGA AGACACTCAC CAAATCGAAC TTGTCGCTCC 
    AAAAGAAGTA GCGAGCAAGT GTCCCTTAAG CTCCTTTAGG TTCTTAAAGA 
    CCAAGGAAGT CCCTACCGGT TTCTTCGAAA TCAAGACTGG CTCGCAAAAT 
    ATCCGTACAC CTTGGTGGGA TTCGAGCGTC ATCTATGGAA GCAACTCGAA 
    AACATTGGAT AGAGTAAGAA CTTACAAAGA CGGGAAACTA AAGATATCGG 
    AGGAGACGGG TCTCCTTCTC CATGACGAAG ACGGTTTAGC TATCTCCGGC 
    GACATTCGTA ACAGTTGGGC TGGTGTCTCC GCTTTGCAAG CTCTCTTCAT 
    CAAAGAGCAC AACGCCGTAT GCGACGCCCT CAAGGATGAG GATGATGATT 
    TGGAAGACGA AGATTTGTAC CGGTACGCTA GGCTAGTGAC CTCAGCCGTG 
    GTAGCCAAGA TTCACACCAT AGATTGGACA GTCCAGCTTC TCAAAACCGA 
    CACTTTACTT GCTGGGATGC GAGCAAATTG GTACGGACTA CTAGGAAAGA 
    AGTTTAAAGA TTCTTTCGGA CATGCAGGCA GTTCGATCTT GGGAGGTGTC 
    GTGGGAATGA AGAAACCGCA AAATCATGGG GTCCCTTACT CTCTAACTGA 
    AGATTTCACC AGCGTCTATC GAATGCATTC TCTCTTACCT GATCAACTCC 
    ATATACTTGA CATTGATGAT GTACCAGGAA CTAATAAATC ACTACCGTTG 
    ATTCAAGAGA TTTCTATGAG AGATTTGATT GGTCGCAAGG GAGAAGAAAC 
    CATGTCTCAC ATTGGATTCA CTAAGCTAAT GGTCTCAATG GGTCACCAAG 
    CAAGTGGTGC CCTTGAACTG ATGAATTATC CGATGTGGTT AAGAGACATT 
    GTTCCCCACG ACCCCAACGG CCAAGCTCGT CCAGACCACG TCGACTTAGC 
    TGCTTTAGAG ATCTACAGGG ACAGGGAGAG GAGCGTCCCA CGGTACAACG 
    AGTTCAGGAG ATCTATGTTT ATGATTCCGA TAACCAAGTG GGAAGATCTA 
    ACGGAGGATG AGGAAGCTAT TGAAGTGTTG GATGACGTGT ACGATGGTGA 
    TGTGGAGGAG CTTGATCTTC TCGTGGGACT TATGGCAGAG AAGAAAATCA 
    AAGGTTTTGC TATCAGTGAG ACTGCTTTTT ACATTTTCCT CATCATGGCC 
    ACAAGGCGAT TAGAAGCGGA TAGGTTTTTC ACGAGTGATT TCAATGAAAC 
    GATTTACACG AAGAAGGGGC TTGAATGGGT GAATACTACA GAGAGTCTCA 
    AGGATGTGAT TGATCGTCAT TATCCTGATA TGACAGACAA ATGGATGAAC 
    TCTGAAAGTG CATTTTCAGT ATGGGATTCA CCTCCACTTA CCAAAAATCC 
    AATCCCTCTC TATCTCCGAA TTCCCTCTTA ATTTGATCAT TTTAATGTGA 
    TCTATGGCAC TTCGAATGAT TTTTTTTCTT CCTTTTTTGG CATTTGTTGG 
    CTGTGAGCTG TGTTTCGACA TTGTAATGTA CTATACAGAT AAATAAATGG 
    GTGATATACA TGTGATTCAA TAAGTTGTTT GTAATACTCT TTTGTTATAA 
    TTAAAATAAT GTATAT

    Gene models with high sequence identity

    1. AT3G01420.1 [+] show detail - Peroxidase superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Haem peroxidase, animal 1.7e-126
    HMMPanther FEEBLY-LIKE PROTEIN 0
    HMMPanther PROSTAGLANDIN G/H SYNTHASE 0
    Coil coiled-coil 0
    ProfileScan Haem peroxidase, animal 70.22
    superfamily Haem peroxidase 2.4e-125
    Gene3D Haem peroxidase, animal 3.9e-106

    See the detailed result >

    AT3G01420.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Curator Summary
    Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid.
    Computational Description
    DOX1; FUNCTIONS IN: lipoxygenase activity; INVOLVED IN: in 6 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Haem peroxidase, animal (InterPro:IPR002007); BEST Arabidopsis thaliana protein match is: alpha dioxygenase (TAIR:AT1G73680.1); Has 1465 Blast hits to 1381 proteins in 214 species: Archae - 0; Bacteria - 94; Metazoa - 1085; Fungi - 168; Plants - 70; Viruses - 1; Other Eukaryotes - 47 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR