F28409

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28409

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)
T2  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28409

Determination of introduced cDNA(s)

  • RAFL09-17-N23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-17-N23 - Resource: pda01941

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-17-N23 - full reading 
    GTTTATCGTA GTGCGTTACA AGCGTTTTAA GCTCTCACTA GCAAGCAAGT 
    ACTAGCAACA ATGGCGTCAA GCACTGCGAC TATGCTCAAA GCCTCACCGG 
    TGAAATCTGA TTGGGTTAAG GGACAGAGTC TTCTCCTCCG TCAACCTTCC 
    TCTGTCTCAG CTATTCGCAG CCACGTGGCA CCTTCCGCTC TCACCGTCCG 
    AGCCGCTTCT GCTTACGCCG ATGAGCTCGT CAAAACCGCT AAAACAATCG 
    CGTCTCCGGG ACACGGAATT ATGGCGATGG ATGAGTCCAA CGCGACTTGT 
    GGAAAGCGTT TGGCGTCAAT TGGGCTAGAG AACACGGAGG CTAACCGTCA 
    AGCTTACAGG ACGTTGCTTG TGTCGGCTCC AGGACTTGGA CAGTACATCT 
    CCGGAGCTAT CCTGTTCGAG GAGACTCTGT ACCAATCCAC CACTGATGGC 
    AAGAAAATGG TTGATGTTCT CGTCGAGCAG AACATCGTCC CTGGCATCAA 
    AGTCGACAAG GGTTTGGTGC CACTTGTTGG GTCTTACGAC GAGTCATGGT 
    GCCAAGGACT TGACGGTTTA GCCTCTCGCA CCGCTGCTTA CTACCAACAA 
    GGTGCTCGTT TCGCCAAATG GCGTACTGTT GTGAGCATTC CAAATGGACC 
    CTCTGCTTTG GCTGTTAAAG AAGCAGCTTG GGGACTTGCT CGCTACGCAG 
    CTATTTCTCA AGACAGCGGT CTGGTGCCGA TTGTGGAGCC AGAGATTATG 
    TTGGACGGAG AACACAGCAT TGACAGGACA TACGACGTTG CAGAGAAGGT 
    TTGGGCTGAG GTCTTCTTCT ACCTCGCTCA GAACAACGTC ATGTTCGAAG 
    GTATTCTCCT GAAGCCAAGC ATGGTTACTC CAGGAGCTGA GGCCACAGAC 
    AGAGCTACTC CTGAGCAGGT TGCTTCCTAC ACTCTCAAGC TCCTTCGCAA 
    CAGAATCCCT CCTGCTGTCC CCGGAATCAT GTTCTTGTCT GGTGGACAGT 
    CCGGGTTGGA GGCGACCTTG AACTTGAACG CAATGAACCA GGCACCGAAC 
    CCATGGCACG TGTCCTTCTC CTACGCACGT GCCTTGCAGA ACACTTGCTT 
    GAAGACATGG GGAGGCAAGG AAGAGAACGT GAAGGCGGCT CAGGACATTC 
    TCTTGGCCAG AGCCAAAGCC AATTCGCTGG CTCAGCTCGG GAAATACACT 
    GGAGAAGGCG AGTCTGAGGA AGCCAAGGAG GGTATGTTTG TAAAAGGCTA 
    CACCTACTAA GCTATTTGTA ATAATGGTTC CATAGATCAA AACTCAAAAA 
    CTTGAGCTTG ATTCTGGTCA TTTGAGTTAT TATACTCTTC TTCAGGTATG 
    AAAAAAAAAA AAAAAA

    Gene models with high sequence identity

    1. AT2G21330.1 [+] show detail - fructose-bisphosphate aldolase 1
      E-value: 0; Score: 99.85

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Aldolase 1e-155
    HMMPfam Fructose-bisphosphate aldolase, class-I 2.1e-165
    Gene3D Aldolase-type TIM barrel 2.2e-141
    HMMPanther Fructose-bisphosphate aldolase, class-I 6e-263
    PatternScan Fructose-bisphosphate aldolase, class-I 0

    See the detailed result >

    AT2G21330.1

    Model type
    Protein coding
    Short Description
    fructose-bisphosphate aldolase 1
    Computational Description
    fructose-bisphosphate aldolase 1 (FBA1); FUNCTIONS IN: fructose-bisphosphate aldolase activity, catalytic activity; INVOLVED IN: response to cadmium ion, pentose-phosphate shunt; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741); BEST Arabidopsis thaliana protein match is: fructose-bisphosphate aldolase 2 (TAIR:AT4G38970.1); Has 4798 Blast hits to 4794 proteins in 909 species: Archae - 0; Bacteria - 735; Metazoa - 1150; Fungi - 8; Plants - 476; Viruses - 0; Other Eukaryotes - 2429 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR