F28436

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28436

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Other)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28436

Determination of introduced cDNA(s)

  • RAFL05-05-C12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-05-C12 - Resource: pda00754

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-05-C12 - full reading 
    CCCCCCCCCC CCCGGCAGAA CCCTTAAACC TTATCTCTTC ACCACCAGCT 
    TCTCAAAGCT TTAGCCTCGA GAGCAAAATT CTCTCAAGCT TTAGCCATGT 
    CTGCCTCTGC TTCTTCCCTC TCTGCTTTCA ATCCTAAATC CCTTCCTCTC 
    TGCGTCTCCA GACCCGCTTC CGTCTCCGTC TTACCTCCTT CCCTCTCCTT 
    CAAACTTCAC TCCGACCACC TCGTCTCTAT CTTCGCTTCC TCCGCCCTCA 
    AATGCTCATC CCCCGCCGAG TACCCGTCGC GTTTCGTTAG AAACGTTGCT 
    GTATCTTCGG ATTTTGAGGT GGAGGAAGAT GATATGTTCG CTGACGGTGA 
    CGATTCAGCG CCTGTGGAGC GTAACTCCTT CTCTCCTGAC CTTAAGCTCT 
    TTGTTGGTAA CCTTTCTTTT AACGTTGATA GCGCTCAGCT TGCTCAGCTC 
    TTTGAGAGCG CTGGAAATGT TGAGATGGTT GAGGTTATCT ATGACAAAGT 
    GACTGGCCGG AGCAGGGGTT TCGGATTTGT GACAATGTCA ACCGCAGCGG 
    AAGTTGAAGC AGCAGCTCAA CAGTTCAATG GCTATGAATT TGAAGGCAGA 
    CCTTTGAGAG TCAATGCTGG CCCTCCTCCA CCTAAAAGAG AGGAATCCTT 
    CTCCAGAGGA CCAAGAAGTG GAGGTTACGG TTCTGAGCGT GGTGGAGGTT 
    ACGGTTCCGA GCGTGGTGGT GGTTATGGTT CCGAGCGTGG TGGTGGTTAT 
    GGTTCCGAGC GTGGTGGTGG ATACGGTTCT CAACGTAGTG GTGGTGGTTA 
    CGGAGGGTCT CAACGTTCCA GTTATGGTTC GGGGTCAGGG TCCGGTTCGG 
    GCTCAGGTTC AGGAAACCGT CTCTACGTGG GCAACCTTTC TTGGGGTGTT 
    GATGACATGG CACTTGAGAA CTTGTTTAAC GAGCAAGGAA AGGTAGTTGA 
    AGCTAGGGTT ATCTACGACA GGGACAGCGG TAGATCCAAG GGTTTTGGAT 
    TTGTGACACT TAGCTCTTCC CAAGAGGTTC AGAAGGCGAT CAATTCCTTG 
    AATGGAGCAG ATTTGGATGG AAGACAAATA AGAGTCTCAG AGGCTGAGGC 
    TAGGCCACCA AGAGGCCAAT TTTGAGCGGT CACACCTCTT TCATATTCTC 
    AAAAAATGCA AATTCTGGAG GGTTCTTTGA AGCATATAGG GTTAGTGGAA 
    AATGGCGGTT TCAGACAGTA ACTAAAACTC ACTGCTGGTG CACGCTAGGC 
    TTTATCCGCC TTTGATGCAT GAAGGTCGTT AAGGAATGGT CTTTTTTTGA 
    GAAAGATAAC AATTAGATTA AAGCAGAGAA CCCATGTTTC TTGTCTGTTC 
    GAATCCTGCG AGATTGGTTG TAGTTGAAGT TGCATTTTCT TCTTGTCTTT 
    TTTGTTGGTA TTTTGACACA ATTTGGCTTT TTGGCATATG AGAGTGACTG 
    TAGCAGTCTG TTTTATTTGA TGTTCGTGAT CTTCTTATGT TCTGAAAACC 
    AGTTTTCCTA AAACTTAACA AATTTCGATA TGGAACAAGA AATTTTTTG

    Gene models with high sequence identity

    1. AT3G53460.1 [+] show detail - chloroplast RNA-binding protein 29
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan RNA recognition motif, RNP-1 18.462
    ProfileScan RNA recognition motif, RNP-1 20.338
    HMMPfam RNA recognition motif, RNP-1 1.6e-19
    HMMPfam RNA recognition motif, RNP-1 3.1e-20
    Gene3D Nucleotide-binding, alpha-beta plait 3.4e-30
    Gene3D Nucleotide-binding, alpha-beta plait 1.4e-27
    HMMPanther RIBONUCLEOPROTEIN, CHLOROPLAST 1.3e-78
    HMMPanther RNA-BINDING PROTEIN 1.3e-78
    HMMSmart RNA recognition motif, RNP-1 1.4e-27
    HMMSmart RNA recognition motif, RNP-1 7.4e-28
    superfamily RNA-binding domain, RBD 2.7e-30
    superfamily RNA-binding domain, RBD 4.3e-27

    See the detailed result >

    AT3G53460.1

    Model type
    Protein coding
    Short Description
    chloroplast RNA-binding protein 29
    Curator Summary
    Encodes a nuclear gene with a consensus RNA-binding domain that is localized to the chloroplast.
    Computational Description
    chloroplast RNA-binding protein 29 (CP29); FUNCTIONS IN: RNA binding, poly(U) RNA binding; LOCATED IN: thylakoid, chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G37220.1); Has 992946 Blast hits to 485878 proteins in 21699 species: Archae - 20986; Bacteria - 587269; Metazoa - 197754; Fungi - 28530; Plants - 64033; Viruses - 69323; Other Eukaryotes - 25051 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR