F28441

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28441

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
root (PO:0009005)
  • abnormal (PATO:0000460)
    (Root::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28441

Determination of introduced cDNA(s)

  • RAFL06-10-C10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-10-C10 - Resource: pda07527

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-10-C10 - full reading 
    CCCTCGTCGC TGCGTCTCTC TCCCGCAACC TTCGATTTTC GTTTATTCGC 
    ATCCATCGGA GAGAGAAAAC AATCAATAAG CGACCATGTT GGTGTACCAA 
    GATCTTCTCA CCGGTGATGA GCTTCTGTCT GACTCTTTCC CTTACAAGGA 
    GATTGAGAAT GGAATCCTCT GGGAAGTAGA AGGAAAGTGG GTTACTGTGG 
    GAGCTGTAGA TGTTAACATT GGTGCCAATC CATCTGCTGA AGAAGGTGGT 
    GAGGATGAAG GTGTTGATGA CTCTACTCAA AAGGTTGTTG ACATTGTCGA 
    CACCTTCAGA CTTCAGGAGC AACCAACTTA TGACAAGAAG GGATTCATCG 
    CTTACATTAA GAAATACATT AAGCTTTTGA CACCCAAGCT CAGCGAAGAA 
    GATCAAGCTG TCTTCAAGAA GGGTATTGAG GGAGCTACCA AGTTTTTGCT 
    CCCCAGGCTC AGTGACTTCC AATTCTTTGT TGGGGAGGGT ATGCATGATG 
    ACAGCACTTT GGTCTTTGCT TACTACAAGG AGGGTTCAAC TAACCCAACA 
    TTTTTGTACT TCGCTCATGG TTTGAAGGAG GTCAAGTGCT GAGAGAGAAG 
    CTCTCGTTGG GTTACTGTGG TCGGTCGCAG CGACTCTCTA AGTTTATGTT 
    TCTTTATATT GTCCTGTGTT TCGTCGTCGT CCCCTATTAA AATTACCTGC 
    CAGTTTACTT TTCTCTCTTC TTGTTTTCTG TGTTGGAAGA TTCTCAAGTT 
    ATTTATTCCG C

    Gene models with high sequence identity

    1. AT3G16640.1 [+] show detail - translationally controlled tumor protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Mss4/translationally controlled tumour-associated TCTP 2.7e-35
    PatternScan Translationally controlled tumour protein, conserved site 0
    PatternScan Translationally controlled tumour protein, conserved site 0
    HMMPanther Translationally controlled tumour-associated TCTP 1.6e-91
    HMMPfam Translationally controlled tumour-associated TCTP 6.4e-62
    superfamily Mss4-like 1.4e-64
    FPrintScan Translationally controlled tumour protein 6.3e-25
    FPrintScan Translationally controlled tumour protein 6.3e-25
    FPrintScan Translationally controlled tumour protein 6.3e-25

    See the detailed result >

    AT3G16640.1

    Model type
    Protein coding
    Short Description
    translationally controlled tumor protein
    Curator Summary
    Encodes a protein homologous to translationally controlled tumor protein (TCTP) from Drosophila. In flies, TCTP functions guanine nucleotide exchange factor in the TOR signaling pathway. TCTP is expressed throughout the plant with highest levels seen in meristematic regions of the shoot and root. Loss of function alleles are not transmitted through the male gametophyte due to defects in pollen tube growth. Hypomorphs, generated through RNAi, are dwarf and have smaller cells. These plants also have defects in lateral and primary root growth as well as root hair growth. The phenotypes are similar to TOR mutants suggesting that TCTP functions in the is pathway in Arabidopsis as well.
    Computational Description
    translationally controlled tumor protein (TCTP); INVOLVED IN: in 8 processes; LOCATED IN: in 6 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Translationally controlled tumour protein (InterPro:IPR018105), Mss4/translationally controlled tumour-associated TCTP (InterPro:IPR011323), Translationally controlled tumour protein, conserved site (InterPro:IPR018103), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: Methionine sulfoxide reductase (MSS4-like) family protein (TAIR:AT3G05540.1); Has 867 Blast hits to 867 proteins in 310 species: Archae - 0; Bacteria - 0; Metazoa - 452; Fungi - 160; Plants - 158; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR