F28504

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28504

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28504

Determination of introduced cDNA(s)

  • RAFL05-09-B06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-09-B06 - Resource: pda01011

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-09-B06 - full reading 
    ACAGTGCTCT CTTTTCCACT ATCGCCATGA TTGCTCAAAC GTGAATAGAA 
    TGATCTGATC CATAATCTAA AAAATTGAGC TTTCATCAGT AACCGAAGCA 
    ATGGCACGGA GGTCTGGAAA TTGCATGAGA TGTCTAGTGA TATTCTCGGT 
    GGTTTCAGCA TTATTAGTGT GTGGACCTGC TCTTTACTGG AAATTGAATA 
    AGGGTTTCGT TGGATCTGCT CGTAGCACCA ACTCCATTTG TCCTCCTTGT 
    GTCTGCGATT TTCCTCCTCC TTTGTCTCTC CTCCAGATTG CTCCCGGGCT 
    TGCAAACCTC TCTATTACAG GTTGTGGCAG CGATGATCCA GAGCTCAAAG 
    AGGAGATGGA GAAGCCGTTT GTGGATCTTC TCACAGAAGA GCTGAAGCTT 
    CAAGAAGCAG TGGCAGACGA GCATAGTCGT CATATGAATG TTACACTTGC 
    CGAAGCTAAA AGAGTTGCTT CACAGTACCA AAAGGAGGCT GAGAAGTGTA 
    ACGCTGCCAC TGAAATTTGC GAATCAGCTA GAGAGAGAGC TCAAGCATTG 
    TTGCTCAAAG AGCGGAAGAT CACTTTTTTG TGGGAGCGCA GAGCTCGGCA 
    ATTAGGTTGG GAAGGTGAGT AAGTAATTCA CTGTTTAGTG ACTTCTTCAC 
    AGTCTACTCT GACGAGTTTC TCAATGGAAG CAAACTAGAT TTTCTCTTCC 
    GTATACAACT CGTGAGAACA TGGGAATCGC TTAATTCGCA AGGCAATGTT 
    TTTGTCTCAC ATGTTCTCTA TATATGTAGT TCTTTTTTGT TTTGCTCTTG 
    GCTCTAGACA CTGCTAAAGA AAGGGTTGGC CTTGTATTGA CTTTTTTCTT 
    CAGATATATA TTTGTCAGTC ACACTGGACA AAGTAAAAAA AAAAAAAAAA

    Gene models with high sequence identity

    1. AT2G24290.1 [+] show detail - Protein of unknown function (DUF1068)
      E-value: 0; Score: 99.89

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPfam Protein of unknown function DUF1068 3.2e-44

    See the detailed result >

    AT2G24290.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF1068)
    Computational Description
    Protein of unknown function (DUF1068); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1068 (InterPro:IPR010471); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1068) (TAIR:AT4G30996.1); Has 111 Blast hits to 111 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 110; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR