F28512

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28512

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28512

Determination of introduced cDNA(s)

  • RAFL05-21-P18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-21-P18 - Resource: pda02825

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-21-P18 - full reading 
    ATTTATCTAT CTATCCAATT GGAGACGAAT CATATCGAGC GATGGATTTG 
    GCAGAACTGT GGGCGATTTT CGGACCCGGA TTCTCCGGCG CCGTTTTCGG 
    AACCGGGTGG TGGTTTTGGG TCGACGCCGT CGTTTGCAGT TCCATCCAAG 
    TTCCCTTCGT CCATTACCTT CCCGGCATAT TCGCTTCTCT CGGAGCTTTG 
    ATGTTCAATT GCGTCAGAAA AGAAGACATT GATTACTCTC CTTACGACGA 
    AGGCGAGTGG AGATTGAAGC TGTGGCTTTT CATAGCGTAT GTCGTAGCAT 
    TTGTTTCCTT AGCTGCTTCT GTTGGCTTGC TGATTCAAGA TTCGGTTGTG 
    AAGACTGGGC CTTCAACTTG GACTGGTGTG GCTGGTGTCT TTCAATGTGT 
    ATTTGTATTG ATAAGTGGGC TAATGTATTG GACATCGCAC TCAGAGTAGC 
    GCACAGGCAC ATACTTCATC TCCGACTCAG ATTCATACTG TGACAACTTA 
    CAAGTTCCTC TCGTTTCTCT ACTATGTAAA TTCCTGTGTC TTGTCTTGTC 
    ACCTTGGCAT TGTGTGCGAG ATTCCTCTGT TGCATCAGTG TGTGTTTCTG 
    TTAAAACTTT GTGTGAATGT TATTGAAAAT ACTCCAAATC AATCAGTTGT 
    CCAAAGAGAA CGCAAAAAAA AAAAAAAATA AAAAAAAAAA AAAAA

    Gene models with high sequence identity

    1. AT1G36980.1 [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0220 (InterPro:IPR...
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Uncharacterised protein family UPF0220 1.3e-66
    HMMPfam Uncharacterised protein family UPF0220 4.7e-39

    See the detailed result >

    AT1G36980.1

    Model type
    Protein coding
    Computational Description
    unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0220 (InterPro:IPR007919); Has 424 Blast hits to 424 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 228; Fungi - 120; Plants - 62; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR