F28528

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28528

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28528

Determination of introduced cDNA(s)

  • RAFL09-32-I20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-32-I20 - Resource: pda05932

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-32-I20 - full reading 
    AGAAACACCG CCTTTAACGT CTCGCTGCAC CATTTTTCAT CGTTGATCAG 
    TCGTCGATCC TCTTGAGTGA TTTGATTTTA GACTTTCTAG TTATCAAACT 
    CGAAAGATGG ATTCTGTCCT TGTAGTGGGC ATTGCATCGG TTATTCTCGG 
    TGCGTTGATC GCTGTACTCT TCTTCGGTAG CTACTTCCGG AAGCGGACAT 
    CGGAGGTGCA ATCCATGGCC AAAGCGGAGC CTCAGGATCC GATCCGGAAT 
    CCAAAGTCGA ATCATCCTGC TCCGAAGAAG AATCATCCCA AATCTCAAGC 
    GTCCGATAAG AATCAGAACA AACGGCATCA TCCTTTAGAT TTAAACACGT 
    TGAAAGGCCA CGGTGATGCT GTTACTGGAC TCTGTTTCTC GTCCGATGGA 
    AAGAGCTTGG CCACAGCTTG CGCTGATGGA GTAATCAGGG TGTTCAAGCT 
    AGATGATGCA TCAAGCAAAA GCTTCAAATT TTTAAGGATA AATCTTCCTG 
    CTGGAGGACA TCCAACCGCC GTGGCATTTG CTGACGATGC CTCATCTATT 
    GTTGTGGCTT GTCATCATAT GTCTGGTTCA TCTTTGTACA TGTACGGTGA 
    AGATAAGCAA AAGGATCAGC AAGGGAAGCT TCCTCTTCCT AGTATCAAAT 
    GGGACCACCA TCATATTCAT GAGAAGAGAT CAGTGCTTAC CATCTCTGGA 
    GCTACTGCAA CTTACGGTAC TGCTGATGGA AGTGTTGTCA TTGCCTCTTG 
    TTCTGAAGGG ACTGATATCG TCCTTTGGCA TGGGAAAACT GGGAGGAATT 
    TGGGACATGT TGATACAAAC CAGTTGAAGA ACCACATGGC AGCTGTATCA 
    CCAAATGGAC GTTTTTTGGC AGCTGCAGCA TTTACTGCAG ATGTGAAAGT 
    GTGGGAAATT GTGTATCAGA AAGATGGTTC TGTGAAAGAG GTTTCAAGAG 
    TTATGCAACT TAAAGGCCAC AAGAGTGCAG TGACTTGGTT ATGCTTTTCT 
    CCAAACTCAG AGCAAATCAT CACCGCTTCA AAAGATGGTT CAATAAGAGT 
    CTGGAACATC AATGTCCGTT ATCATCTTGA TGAGGATCCA AAGACTTTGA 
    AGGTGTTCCC GATTCCACTT TGCGACTCAG GAGGCAATCC GTTGCACTAT 
    GATCGTCTCA GCTTATGCCC AGAGGGAAAG ATATTGGCAG CAAGCCATGG 
    TTCCACATTG CAGTGGTTAT GTGCTGAAAC TGGAAATGTC TTGGACACAG 
    CTGAGAAAGC CCACGAAGGG GATATCACAT GCATATCTTG GGCACCCAAG 
    GCTATTACAG TTGGGGAAAG ACATGCCATG GTTTTGGGGA CATCAGGCGA 
    TGACAAGAAA GTGAAGCTGT GGGAAGCTCC AAAGTCGCAA TCTTTGTAGG 
    CTCTCGCATA CACGTAGTCC CTTGATGACA TGAGGCGTAT TTAAACGGTA 
    CAACTTGCGA GGAAAAAAAC TCTAATAGGT TTTGTTTCGA GTCCCAAGTT 
    GGGATCAAAT GAAGGGTGGT TTAAAGTCCT TCTTGTTACC AAGTGTCTTT 
    TAACTTCTGA AGTTTTGAAT TTTGCTCATA GGACTAGTAC AACACTCACA 
    GTCTTCTATG TTTTCCAAAT TAAGGAAATT TAAAAAGCAC ACAACAACAC 
    TAAGAAATAT GAATCGATTA AAATTATTAT ACGCAG

    Gene models with high sequence identity

    1. AT4G00090.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart WD40 repeat 0.000000033
    HMMSmart WD40 repeat 37
    HMMSmart WD40 repeat 0.00000000016
    HMMSmart WD40 repeat 0.0064
    superfamily WD40 repeat-like-containing domain 1.3e-38
    HMMPanther TRANSDUCIN BETA-LIKE 2 PROTEIN 3.6e-26
    HMMPanther WD40 REPEAT PROTEIN 3.6e-26
    PatternScan WD40 repeat, conserved site 0
    PatternScan WD40 repeat, conserved site 0
    Gene3D WD40/YVTN repeat-like-containing domain 2.9e-36
    ProfileScan WD40 repeat 2 11.511
    ProfileScan WD40 repeat 2 15.922
    ProfileScan WD40 repeat 2 9.172
    ProfileScan WD40-repeat-containing domain 10.944
    ProfileScan WD40-repeat-containing domain 16.296
    ProfileScan WD40-repeat-containing domain 9.098
    HMMPfam WD40 repeat, subgroup 0.000000019
    HMMPfam WD40 repeat, subgroup 0.00000000008
    HMMPfam WD40 repeat, subgroup 0.0000012

    See the detailed result >

    AT4G00090.1

    Model type
    Protein coding
    Short Description
    Transducin/WD40 repeat-like superfamily protein
    Computational Description
    Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: periodic tryptophan protein 2 (TAIR:AT1G15440.2); Has 19942 Blast hits to 11235 proteins in 520 species: Archae - 42; Bacteria - 5638; Metazoa - 5982; Fungi - 4099; Plants - 1742; Viruses - 0; Other Eukaryotes - 2439 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR