F28548

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28548

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28548

Determination of introduced cDNA(s)

  • RAFL14-55-B03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL14-55-B03 - Resource: pda18755

    full reading [+] show sequence

    Nucleotide sequence: RAFL14-55-B03 - full reading 
    ACTTGACACC TCCATCTTCT TCCTTGCTCT CTCTCTCTAT CTTTCTCCAA 
    CAATCAAATA ATGGGTTCAA CAGGAAACCC TAATCCATGG GGTACAACAT 
    ACGATTCATA CAGAGACTGT TCTCAAGGAG TATGCAGTGT CTATTGCCCT 
    CAATGGTGTT ACGTCATCTT CCCTCCTCCT CCTTCCTTCT ATCTCGACGA 
    CGAAGACGAC TCTTCCTCCT CTGATTTCTC TCCTCTCCTC ATCGCTCTCA 
    TCGGAATCCT CGCTAGCGCC TTCATCCTCG TCAGCTACTA CACTCTCATC 
    TCCAAATACT GCCACCGCCG TCGCCACAAC TCCTCCTCTA CCTCCGCCGC 
    AGCTATAAAC AGAATCTCAT CAGATTACAC CTGGCAAGGA ACCAACAACA 
    ACAACAACAA CGGAGCTACG AATCCGAATC AAACGATTGG TGGTGGTGGT 
    GGCGATGGAC TCGATGAATC TCTGATTAAA TCGATAACTG TTTACAAATA 
    CAGAAAGATG GATGGATTTG TTGAATCTTC AGATTGCTCT GTTTGTTTAA 
    GCGAGTTTCA AGAGAACGAG AGCTTGAGAT TGTTACCTAA ATGCAACCAC 
    GCGTTTCACG TTCCTTGTAT TGATACTTGG TTGAAATCTC ACTCTAATTG 
    TCCTCTCTGC CGCGCCTTCA TCGTCACTTC CTCCGCCGTT GAGATCGTCG 
    ATTTAACCAA TCAACAGATC GTTACGGAGA ACAACTCGAT TTCGACCGGA 
    GATGATTCCG TCGTTGTCGT TAACTTAGAT CTGGAAAATT CTAGATCTCG 
    GAATGAGACG GTTAATGAAG GATCGACGCC GAAACCACCG GAGATGCAGG 
    ATTCAAGAGA CGGAGAAGAG CGGAGATCGG CGTCGTTAAA CTCAGGCGGC 
    GGTGTGGTAT CGATCGCAGA TATACTAAGG GAGATTGAAG ACGACGAAGA 
    ATCAGCGGGT GTAGGAACTT CTCGGTGGGT AGAAGAAGGG GAAGGAGAGA 
    AGACGCCTCC GCCGTCAGGA TCGGCGGCGA ATCAAACAAA CGGAATTTCG 
    AATTTTCTGG TTCGGAGTTC AATGGCGGCG ATGAAGAGAT CTGGTTACGA 
    TAGAGCAAAA AATTACCGTT TACCGAAATA AGTTATAAAA AAAA

    Gene models with high sequence identity

    1. AT3G03550.1 [+] show detail - RING/U-box superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Zinc finger, RING-type 0.00000011
    HMMPfam Zinc finger, C3HC4 RING-type 0.000000042
    ProfileScan Zinc finger, RING-type 12.902
    HMMPanther RING FINGER PROTEIN 38 1.5e-17
    HMMPanther RING FINGER PROTEIN 6/12/38 1.5e-17
    Gene3D no description 0.0000000000000091
    superfamily RING/U-box 1.6e-16

    See the detailed result >

    AT3G03550.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to karrikin; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G17600.1); Has 9886 Blast hits to 9859 proteins in 306 species: Archae - 0; Bacteria - 2; Metazoa - 2318; Fungi - 804; Plants - 5150; Viruses - 98; Other Eukaryotes - 1514 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR