F28627

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28627

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
T2  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28627

Determination of introduced cDNA(s)

  • RAFL06-84-C12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-84-C12 - Resource: pda07730

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-84-C12 - full reading
    ATTTTGGGAA CTTTCATCCA TAAACTTCTA TTTTTCTCAT CGCAAACTTG 
    AACCGTCGTA ACCCTAAATC GCCATCTTCA TCATCGGCAA ATCGAATCTC
    CGATTATATA TCAAATAGCT TACCAAATCC GACATGACCC AGGCCCTCGT
    TTTCGGAGGA CTATAATGAT CGGACTCTTC GTGTCCCGTC TCGATTGCAT
    GGGGTTTGAG CTATGCCGGA GCTTCGCCGT GGAGTCCGCC GTGGCCGTGT
    TACTGATGCT GTAGCTCCCA ATCAGCTTCC GCAAACACCT ACAGAAAAGA
    AACCGAAGAA GAGTACCGTT AAAGCTCCAA AACCGGTTGC CGGCGGAGTT
    ACAGGAGTTG CAGAGAGGCC GAGGACTAGA TTAGCGGCGA GGAAATTAAA
    GGAGGAAGAT AAAGAGATAC CTCAGGAGAT TCCGGTTGTT GTGCCGTCTA
    AGGATAGCGA TATCGATAAA AACAAGGGTA AAGAGGTAGT CGTTGAAGAA
    GAGAAGAAAG ATATGGCTAT TGGTAATGAT AGTGGTGGCT CTAACAAGGC
    GGCTGCTCAG GAAGAAGAAG GAAATACTGC TCCTTTCCCT GAGAGGGTTC
    AAGTTGGAGG ATCACCACTA TATAAAGTTG AGAGAAAGCT GGGGAAGGGT
    GGTTTTGGAC AAGTATTTGT CGGACGTCGT ATTAGTGGCG GTAATGATCG
    TAGTGCAGGA GCTAGCATCT TGGAGGTTGC TCTAAAGTTT GAGCATAGGA
    GCAGCAAGGG TTGCAACTAT GGTCCTCCAC ATGAGTGGCA GGTTTACAAC
    ACCTTGGGTG GTAGCCATGG AGTCCCTAGA GTACATTTCA AAGGCAGGCA
    AGGAGACTAT TATGTCATGG TTATGGACAT GCTTGGGCCT AGCTTATGGG
    ATTTATGGAA TACTTCAGGG CAAGCAATGT CCTCGGAAAT GGTAGCTTGC
    ATTGCGGTTG AATCACTTTC CATCCTTGAA AAGATGCATG CAAAAGGTTA
    TGTGCATGGG GATGTTAAGC CAGAAAATTT CTTACTCGGC CAGCCTTCAA
    CGTCTCAAGA GAAAAAACTG TTTCTTGTTG ATTTGGGACT AGCTACAAAG
    TGGAGAGAAG GTGGTAGCGG ACAACATGTT GAATATGATC AACGTCCTGA
    TATGTTTAGA GGGACAGTTA GATACGCAAG TGCACATGCT CATTTAGGGA
    GAACTGCTAG CAGAAGGGAT GATCTGGAAT CATTAGCATA TACACTGATC
    TTTCTTCACC GAGGTAGATT GCCATGGCAA GGATATCAGG GAGATAACAA
    GTCATTCCTT GTTTGCAAAA AGAAGATGGC AACATCGCCG GATATGCTTT
    GTTGTTTTTG TCCCCCTCCT TTCAAACAAT TTCTTGAGAT CGTGGTAAAT
    ATGAAATTTG ATGAAGAACC CAACTATGGA AAGTTAGTAT CTCTGTTTCA
    AGACCTCTTG GGCGAAAATC CGGCAATTAG GCCTATAAAC ACAGAGGGTG
    CTCAAAAGAT CATATTCCAA GTTGGCCAGA AGCGAGGTAG GTTGAGCATT
    GGGGAGGAAG AAGAAGATGC CCCTAGGAAA AAGGTCCGTC TAGGAGTCCC
    TGCAACGCAA TGGATATCGA TTTACAATGC CAGGCAACCA ATGAAGCAGA
    GGTATCATTA TAATGTGGCT GATATAAGAC TGGCACAGCA TATTGAGAGA
    GGTATTGCAG ATGGTTTGTT GATAAGCTGT GTATCATCAT GTTCGAATCT
    CTGGGCATTG ATAATGGATG CTGGAACTGG CTTCACGCAC CAAGTCTATG
    AACTCTCTCC TGTATTCTTG CACAAGGAAT GGATTATGGA GCAGTGGGAG
    AAGAACTACT ACATTAGTTC TATTGCTGGT GCAAGCAATG GAAGCTCCTT
    AGTTGTCATG TCAAAAGGTA CGCAGTATAC ACAGCAGTCT TACAAAGTAA
    GCGATTCATT CCCGTTCAAG TGGATAAACA AGAAATGGAG AGAAGGCTTC
    CATGTAACCT CAATGGCAAC AGCTGGAAAT CGATGGGGTG TTGTTATGTC
    CCGCAATTCT GGCTACAGTG AACAGGTTGT GGAACTTGAT TTTCTGTATC
    CAAGTGAAGG CATCCACAGG CGTTGGGATG GTGGATTCAG AATCACATCA
    ACAGCAGCCA CAACCGATCA AGCTGCTCTC ATCCTAAGCA TCCCACGTCG
    TAGACTTGTT GATGAGACAC AAGAGACGTT ACGTACCTCT CAATTCCCCA
    GCACACACGT CAAGGAAAAA TGGGGAAAGA ATCTCTACCT TGCATCGTTA
    AGCTATGGCC GAACTGTATC TTGAGACTTA TTAGTAAAAA CTGTTGAAGG
    ACGAGAGAAA TATGTTTCTA AGTCTCGGCT CCTATTCCTT ATCCAACCCT
    ATGGCCTCTC AGGCTCTGTT GTGCTTCTTC TTTTTTTTCA GTTGAATTGT
    GAAGCAAAAA TGTGGTGATT GTGTTGTTTA TTCCCCCCTT GTGAAGGGGA
    TTGAGCCATA ATCACCAGTT TACCTACACA TTTCCCTCGA AATTGCTATA
    TTTAATTTTT AAATCAAGAA AAGATATTTT TGTCACCAAA TATTCTATAG
    TTGTCCAATT CTGTAACCTA ATTATCGAAT TCATATCAAA AAAAAAAAAA
    AAA

    Gene models with high sequence identity

    1. AT3G13670.1 [+] show detail - Protein kinase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMPfam Serine/threonine-protein kinase-like domain 1.6e-24
    HMMPanther CASEIN KINASE 5.6e-138
    HMMPanther CASEIN KINASE-RELATED 5.6e-138
    superfamily Protein kinase-like domain 1.3e-45
    ProfileScan Protein kinase, catalytic domain 23.736
    HMMSmart Serine/threonine-protein kinase domain 2.6e-12
    Gene3D no description 1.1e-18
    Gene3D no description 3.8e-39

    See the detailed result >

    AT3G13670.1

    Model type
    Protein coding
    Short Description
    Protein kinase family protein
    Computational Description
    Protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase family protein (TAIR:AT2G25760.1); Has 17131 Blast hits to 17075 proteins in 1486 species: Archae - 12; Bacteria - 5943; Metazoa - 4767; Fungi - 1425; Plants - 2358; Viruses - 214; Other Eukaryotes - 2412 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR