F28627

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28627

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
T2  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28627

Determination of introduced cDNA(s)

  • RAFL06-84-C12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-84-C12 - Resource: pda07730

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-84-C12 - full reading 
    ATTTTGGGAA CTTTCATCCA TAAACTTCTA TTTTTCTCAT CGCAAACTTG 
    AACCGTCGTA ACCCTAAATC GCCATCTTCA TCATCGGCAA ATCGAATCTC 
    CGATTATATA TCAAATAGCT TACCAAATCC GACATGACCC AGGCCCTCGT 
    TTTCGGAGGA CTATAATGAT CGGACTCTTC GTGTCCCGTC TCGATTGCAT 
    GGGGTTTGAG CTATGCCGGA GCTTCGCCGT GGAGTCCGCC GTGGCCGTGT 
    TACTGATGCT GTAGCTCCCA ATCAGCTTCC GCAAACACCT ACAGAAAAGA 
    AACCGAAGAA GAGTACCGTT AAAGCTCCAA AACCGGTTGC CGGCGGAGTT 
    ACAGGAGTTG CAGAGAGGCC GAGGACTAGA TTAGCGGCGA GGAAATTAAA 
    GGAGGAAGAT AAAGAGATAC CTCAGGAGAT TCCGGTTGTT GTGCCGTCTA 
    AGGATAGCGA TATCGATAAA AACAAGGGTA AAGAGGTAGT CGTTGAAGAA 
    GAGAAGAAAG ATATGGCTAT TGGTAATGAT AGTGGTGGCT CTAACAAGGC 
    GGCTGCTCAG GAAGAAGAAG GAAATACTGC TCCTTTCCCT GAGAGGGTTC 
    AAGTTGGAGG ATCACCACTA TATAAAGTTG AGAGAAAGCT GGGGAAGGGT 
    GGTTTTGGAC AAGTATTTGT CGGACGTCGT ATTAGTGGCG GTAATGATCG 
    TAGTGCAGGA GCTAGCATCT TGGAGGTTGC TCTAAAGTTT GAGCATAGGA 
    GCAGCAAGGG TTGCAACTAT GGTCCTCCAC ATGAGTGGCA GGTTTACAAC 
    ACCTTGGGTG GTAGCCATGG AGTCCCTAGA GTACATTTCA AAGGCAGGCA 
    AGGAGACTAT TATGTCATGG TTATGGACAT GCTTGGGCCT AGCTTATGGG 
    ATTTATGGAA TACTTCAGGG CAAGCAATGT CCTCGGAAAT GGTAGCTTGC 
    ATTGCGGTTG AATCACTTTC CATCCTTGAA AAGATGCATG CAAAAGGTTA 
    TGTGCATGGG GATGTTAAGC CAGAAAATTT CTTACTCGGC CAGCCTTCAA 
    CGTCTCAAGA GAAAAAACTG TTTCTTGTTG ATTTGGGACT AGCTACAAAG 
    TGGAGAGAAG GTGGTAGCGG ACAACATGTT GAATATGATC AACGTCCTGA 
    TATGTTTAGA GGGACAGTTA GATACGCAAG TGCACATGCT CATTTAGGGA 
    GAACTGCTAG CAGAAGGGAT GATCTGGAAT CATTAGCATA TACACTGATC 
    TTTCTTCACC GAGGTAGATT GCCATGGCAA GGATATCAGG GAGATAACAA 
    GTCATTCCTT GTTTGCAAAA AGAAGATGGC AACATCGCCG GATATGCTTT 
    GTTGTTTTTG TCCCCCTCCT TTCAAACAAT TTCTTGAGAT CGTGGTAAAT 
    ATGAAATTTG ATGAAGAACC CAACTATGGA AAGTTAGTAT CTCTGTTTCA 
    AGACCTCTTG GGCGAAAATC CGGCAATTAG GCCTATAAAC ACAGAGGGTG 
    CTCAAAAGAT CATATTCCAA GTTGGCCAGA AGCGAGGTAG GTTGAGCATT 
    GGGGAGGAAG AAGAAGATGC CCCTAGGAAA AAGGTCCGTC TAGGAGTCCC 
    TGCAACGCAA TGGATATCGA TTTACAATGC CAGGCAACCA ATGAAGCAGA 
    GGTATCATTA TAATGTGGCT GATATAAGAC TGGCACAGCA TATTGAGAGA 
    GGTATTGCAG ATGGTTTGTT GATAAGCTGT GTATCATCAT GTTCGAATCT 
    CTGGGCATTG ATAATGGATG CTGGAACTGG CTTCACGCAC CAAGTCTATG 
    AACTCTCTCC TGTATTCTTG CACAAGGAAT GGATTATGGA GCAGTGGGAG 
    AAGAACTACT ACATTAGTTC TATTGCTGGT GCAAGCAATG GAAGCTCCTT 
    AGTTGTCATG TCAAAAGGTA CGCAGTATAC ACAGCAGTCT TACAAAGTAA 
    GCGATTCATT CCCGTTCAAG TGGATAAACA AGAAATGGAG AGAAGGCTTC 
    CATGTAACCT CAATGGCAAC AGCTGGAAAT CGATGGGGTG TTGTTATGTC 
    CCGCAATTCT GGCTACAGTG AACAGGTTGT GGAACTTGAT TTTCTGTATC 
    CAAGTGAAGG CATCCACAGG CGTTGGGATG GTGGATTCAG AATCACATCA 
    ACAGCAGCCA CAACCGATCA AGCTGCTCTC ATCCTAAGCA TCCCACGTCG 
    TAGACTTGTT GATGAGACAC AAGAGACGTT ACGTACCTCT CAATTCCCCA 
    GCACACACGT CAAGGAAAAA TGGGGAAAGA ATCTCTACCT TGCATCGTTA 
    AGCTATGGCC GAACTGTATC TTGAGACTTA TTAGTAAAAA CTGTTGAAGG 
    ACGAGAGAAA TATGTTTCTA AGTCTCGGCT CCTATTCCTT ATCCAACCCT 
    ATGGCCTCTC AGGCTCTGTT GTGCTTCTTC TTTTTTTTCA GTTGAATTGT 
    GAAGCAAAAA TGTGGTGATT GTGTTGTTTA TTCCCCCCTT GTGAAGGGGA 
    TTGAGCCATA ATCACCAGTT TACCTACACA TTTCCCTCGA AATTGCTATA 
    TTTAATTTTT AAATCAAGAA AAGATATTTT TGTCACCAAA TATTCTATAG 
    TTGTCCAATT CTGTAACCTA ATTATCGAAT TCATATCAAA AAAAAAAAAA 
    AAA

    Gene models with high sequence identity

    1. AT3G13670.1 [+] show detail - Protein kinase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMPfam Serine/threonine-protein kinase-like domain 1.6e-24
    HMMPanther CASEIN KINASE 5.6e-138
    HMMPanther CASEIN KINASE-RELATED 5.6e-138
    superfamily Protein kinase-like domain 1.3e-45
    ProfileScan Protein kinase, catalytic domain 23.736
    HMMSmart Serine/threonine-protein kinase domain 2.6e-12
    Gene3D no description 1.1e-18
    Gene3D no description 3.8e-39

    See the detailed result >

    AT3G13670.1

    Model type
    Protein coding
    Short Description
    Protein kinase family protein
    Computational Description
    Protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase family protein (TAIR:AT2G25760.1); Has 17131 Blast hits to 17075 proteins in 1486 species: Archae - 12; Bacteria - 5943; Metazoa - 4767; Fungi - 1425; Plants - 2358; Viruses - 214; Other Eukaryotes - 2412 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR