F28646

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	dark green (PATO:0001249) (Rosette leaf::Color::dark) increased size (PATO:0000586) (Rosette leaf::Shape::large) epinastic (PATO:0000945) (Rosette leaf::Shape::epinastic)
	stem (PO:0009047)	present in fewer numbers in organism (PATO:0001997) (Stem::Number::few) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28646

Determination of introduced cDNA(s)

RAFL07-11-E17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-11-E17 - Resource: pda01462

full reading [+] show sequence

ACTTTCAAAG AAGAGAGAGA GAAAGAAAGA TGGAGAAGAA CATGAAGTTT 
CCAGTAGTAG ACTTGTCCAA GCTCAATGGG GAAGAGAGAG ACCAAACCAT 
GGCTCTAATC AATGAAGCTT GTGAGAATTG GGGCTTCTTT GAGATAGTGA 
ACCATGGATT ACCACATGAC TTAATGGACA AGATCGAGAA GATGACAAAG 
GACCATTACA AGACATGCCA AGAACAAAAG TTCAATGACA TGCTCAAGTC 
CAAAGGTTTG GATAATCTTG AGACAGAAGT CGAAGATGTC GATTGGGAAA 
GCACTTTCTA CGTTCGTCAC CTCCCTCAAT CCAATCTCAA TGACATTTCA 
GATGTGTCTG ATGAATACAG GACGGCCATG AAAGACTTTG GTAAGAGACT 
GGAGAATCTT GCTGAGGATT TGTTGGATCT ACTGTGTGAG AATCTAGGGT 
TAGAGAAAGG GTATTTGAAG AAAGTGTTTC ATGGAACAAA AGGCCCAACC 
TTTGGGACAA AGGTGAGCAA TTATCCACCA TGTCCTAAAC CAGAGATGAT 
CAAAGGTCTT AGGGCCCACA CTGATGCAGG AGGCATCATC TTGTTGTTTC 
AAGACGACAA GGTCAGTGGT CTCCAGCTTC TTAAAGATGG TGACTGGATT 
GATGTTCCTC CTCTCAACCA CTCTATTGTC ATCAATCTTG GTGACCAACT 
TGAGGTGATA ACCAACGGGA AGTATAAGAG TGTGCTGCAC CGTGTGGTGA 
CTCAACAAGA AGGAAACAGG ATGTCGGTTG CATCGTTTTA CAACCCGGGA 
AGCGATGCGG AGATCTCACC AGCTACTTCG CTTGTCGAGA AAGATTCCGA 
GTACCCGAGT TTCGTCTTTG ATGACTACAT GAAGCTTTAT GCAGGGGTCA 
AGTTTCAGCC CAAGGAGCCA CGGTTCGCAG CAATGAAGAA TGCTTCTGCA 
GTTACAGAAC TGAATCCTAC AGCAGCCGTA GAGACTTTCT AAAAATGGAT 
TTGAGATTCA AGTGAAGCAG AGAAAGAAAG ATGAGTTTGT GTTGTGTGTT 
ATGGCAATAA GTTAAAACTT GTATTAGTGT TGATTAATTG TTGGTCAATT 
GGTGTGTTTT AAAGTGTGGG GTGTTTATGT TTATGGAAGA TGATAATAAT 
TATAAAAATC TAAATTCTAG GAAAAAAAAA AAAAAAA

Gene models with high sequence identity

AT1G62380.1 [+] show detail - ACC oxidase 2
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	1.3e-91
HMMPfam	Oxoglutarate/iron-dependent oxygenase	3.3e-24
superfamily	Clavaminate synthase-like	3.1e-88
HMMPanther	1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE	3.1e-211
HMMPanther	IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL	3.1e-211

See the detailed result >

AT1G62380.1

Model type: Protein coding
Short Description: ACC oxidase 2
Curator Summary: Encodes a protein similar to 1-aminocyclopropane-1-carboxylic oxidase (ACC oxidase). Expression of the AtACO2 transcripts is affected by ethylene.
Computational Description: ACC oxidase 2 (ACO2); FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate oxidase activity, copper ion binding; INVOLVED IN: response to salt stress, detection of ethylene stimulus, ethylene biosynthetic process; LOCATED IN: cell wall, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G12010.1); Has 8564 Blast hits to 8520 proteins in 992 species: Archae - 0; Bacteria - 1100; Metazoa - 104; Fungi - 1037; Plants - 4951; Viruses - 0; Other Eukaryotes - 1372 (source: NCBI BLink).
Link: InterPro Scan - TAIR