F28649

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small)
	rosette leaf (PO:0000014)	present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
T2
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small)
	rosette leaf (PO:0000014)	dark green (PATO:0001249) (Rosette leaf::Color::dark) abnormal (PATO:0000460) (Rosette leaf::Others)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others) present in fewer numbers in organism (PATO:0001997) (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28649

Determination of introduced cDNA(s)

RAFL06-74-M11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-74-M11 - Resource: pda03523

full reading [+] show sequence

AACCTTCTCC TCTTTCTTAC GCAATTACAA CTTCAACGCC TCTCTATCTC 
TTCGCCGTGA ATGTCGAGAT AGTCGTAAGC TCTCTGCTTT TCAAATTTCT 
CTCAAATTGA GGTAGAGAGA GAGGGCACAG AGATAGAGAG AGAGGGGCAT 
AGGAAACGGT GATTTTCCCA GTTCCCGGAG GAACAATCGG CTGATTTCTC 
TGTAATCGAA GAATCTAAAC CTCACCCACT CGAAATCAGC TCGTGGGTTT 
TGGGGGGTCT CTATTAATTT CCAAATTCTG GAGAAAAATC TTGTATTTCT 
TCAAGATGTT TGGGTGTGAT TGTTTTTACT GGAGCAGAGG AATCTCCGAG 
TTGGATTCGG AATCGTCCGA GCCAAAGCCC TTCTCACTTC CGGCTCCTCT 
TCCTAGTTGG CCGCAAGGTA AAGGTTTTGC CACAGGAAGA ATTAGCCTAG 
GAGAAATAGA AGTGGTGAAA ATCACCAAGT TCCATCGAGT TTGGAGCTCT 
GATTCATCAC ACGACAAATC AAAACGTGCT ACATTTTACA GAGCCGATGA 
CATTCCAGAA GGATTCCATT GCCTTGGTCA CTATTGCCAG CCAACCGATC 
AGCCCTTGAG AGGTTATGTA CTTGCAGCTC GGACTAGCAA AGCCGTCAAT 
GCTGATGATT TCCCGCCCTT GAAAAAGCCT GTGAGTTATT CTTTAGTTTG 
GAGTGCAGAT TCAGAGAAAA ATGGTGGTGG TTATTTCTGG CTACCTAATC 
CTCCGGTTGG TTACAGAGCA ATGGGAGTTA TTGTAACCCA TGAACCAGGT 
GAACCTGAAA CAGAGGAGGT CAGATGTGTA AGAGAGGATC TTACAGAGAG 
TTGTGAAACC TCTGAGATGA TACTTGAGGT GGGTTCTTCG AAGAAGTCGA 
ACGGCTCTAG TTCTCCTTTT AGTGTATGGA GCACCCGACC TTGCGAGAGA 
GGGATGCTGT CACAAGGTGT CGCTGTTGGG TCATTCTTTT GCTGCACGTA 
TGATCTGTCG TCTGAGAGGA CGGTCCCTGA TATCGGATGC TTAAAGAATC 
TTGATCCGAC CTTACACGCG ATGCCAAATC TCGACCAGGT CCATGCGGTT 
ATCGAACACT TCGGACCAAC AGTCTACTTC CACCCAGAAG AGGCTTACAT 
GCCTTCATCT GTACAATGGT TCTTTAAGAA TGGAGCTTTG TTGTACCGGT 
CAGGGAAATC AGAAGGTCAA CCGATTAACT CCACGGGCTC GAACTTGCCT 
GCTGGAGGAT GCAATGATAT GGATTTCTGG ATAGATCTTC CTGAAGACGA 
AGAAGCAAAG AGTAATCTCA AGAAAGGAAA CCTTGAAAGC TCGGAGCTTT 
ACGTTCATGT GAAACCAGCA CTTGGTGGAA CTTTCACCGA CATCGTTATG 
TGGATTTTCT GCCCCTTTAA TGGCCCAGCC ACGCTCAAAA TCGGCCTATT 
CACGTTACCT ATGACCCGCA TAGGAGAACA TGTCGGTGAT TGGGAACATT 
TCACTTTCCG CATATGTAAT TTCTCTGGTG AGCTTTGGCA AATGTTCTTT 
TCTCAGCATA GTGGTGGTGG TTGGGTTGAT GCATCAGATA TTGAGTTTGT 
GAAAGATAAC AAACCGGCTG TGTACTCATC TAAACACGGA CATGCGAGTT 
TCCCTCATCC AGGAATGTAC CTCCAAGGCT CGTCAAAGCT CGGGATTGGA 
GTCAGAAACG ATGTTGCAAA AAGCAAGTAC ATTGTGGATT CAAGCCAAAG 
GTATGTGATA GTAGCAGCTG AGTATTTAGG TAAAGGAGCT GTGATAGAGC 
CGTGCTGGTT ACAGTATATG AGAGAATGGG GTCCGACCAT TGCATATGAT 
TCAGGGTCTG AGATCAATAA GATCATGAAT CTTCTTCCTT TGGTTGTTAG 
GTTCTCTATT GAGAACATTG TTGATTTGTT TCCCATTGCT CTTTATGGAG 
AAGAAGGTCC CACAGGGCCA AAGGAGAAAG ATAACTGGGA AGGAGATGAG 
ATGTGCTGAA AGAAGACAAA CCTCTTTGTG ATCAAGACGG TTTAATGGAA 
GATGAAGTCT CTTGTTGAAT CGGAGGGTTT TGATCTCTAC TCTACTAGTA 
ATTGTGACTA ATATGTAATT TACAGTATAC TAGAATAGGG TTTGATCTTG 
GTGGTTGTAA TTTGTTGATG TAAGACCTAA AACGCTGTGT TTGCGGCTGT 
AATCAGCTGC GACAGCTCAT GAGCAATATG AATGATTGAT TTTGTTGT

Gene models with high sequence identity

AT3G04350.1 [+] show detail - Plant protein of unknown function (DUF946)
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	PRE-MRNA PROCESSING-RELATED	0
HMMPanther	PRE-MRNA PROCESSING PROTEIN PRP39-RELATED	0
HMMPfam	Protein of unknown function DUF946	8.5e-264

See the detailed result >

AT3G04350.1

Model type: Protein coding
Short Description: Plant protein of unknown function (DUF946)
Computational Description: Plant protein of unknown function (DUF946); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946 (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF946) (TAIR:AT5G18490.1); Has 389 Blast hits to 369 proteins in 101 species: Archae - 0; Bacteria - 21; Metazoa - 15; Fungi - 143; Plants - 203; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link: InterPro Scan - TAIR