F28649

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28649

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
T2  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28649

Determination of introduced cDNA(s)

  • RAFL06-74-M11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-74-M11 - Resource: pda03523

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-74-M11 - full reading
    AACCTTCTCC TCTTTCTTAC GCAATTACAA CTTCAACGCC TCTCTATCTC 
    TTCGCCGTGA ATGTCGAGAT AGTCGTAAGC TCTCTGCTTT TCAAATTTCT
    CTCAAATTGA GGTAGAGAGA GAGGGCACAG AGATAGAGAG AGAGGGGCAT
    AGGAAACGGT GATTTTCCCA GTTCCCGGAG GAACAATCGG CTGATTTCTC
    TGTAATCGAA GAATCTAAAC CTCACCCACT CGAAATCAGC TCGTGGGTTT
    TGGGGGGTCT CTATTAATTT CCAAATTCTG GAGAAAAATC TTGTATTTCT
    TCAAGATGTT TGGGTGTGAT TGTTTTTACT GGAGCAGAGG AATCTCCGAG
    TTGGATTCGG AATCGTCCGA GCCAAAGCCC TTCTCACTTC CGGCTCCTCT
    TCCTAGTTGG CCGCAAGGTA AAGGTTTTGC CACAGGAAGA ATTAGCCTAG
    GAGAAATAGA AGTGGTGAAA ATCACCAAGT TCCATCGAGT TTGGAGCTCT
    GATTCATCAC ACGACAAATC AAAACGTGCT ACATTTTACA GAGCCGATGA
    CATTCCAGAA GGATTCCATT GCCTTGGTCA CTATTGCCAG CCAACCGATC
    AGCCCTTGAG AGGTTATGTA CTTGCAGCTC GGACTAGCAA AGCCGTCAAT
    GCTGATGATT TCCCGCCCTT GAAAAAGCCT GTGAGTTATT CTTTAGTTTG
    GAGTGCAGAT TCAGAGAAAA ATGGTGGTGG TTATTTCTGG CTACCTAATC
    CTCCGGTTGG TTACAGAGCA ATGGGAGTTA TTGTAACCCA TGAACCAGGT
    GAACCTGAAA CAGAGGAGGT CAGATGTGTA AGAGAGGATC TTACAGAGAG
    TTGTGAAACC TCTGAGATGA TACTTGAGGT GGGTTCTTCG AAGAAGTCGA
    ACGGCTCTAG TTCTCCTTTT AGTGTATGGA GCACCCGACC TTGCGAGAGA
    GGGATGCTGT CACAAGGTGT CGCTGTTGGG TCATTCTTTT GCTGCACGTA
    TGATCTGTCG TCTGAGAGGA CGGTCCCTGA TATCGGATGC TTAAAGAATC
    TTGATCCGAC CTTACACGCG ATGCCAAATC TCGACCAGGT CCATGCGGTT
    ATCGAACACT TCGGACCAAC AGTCTACTTC CACCCAGAAG AGGCTTACAT
    GCCTTCATCT GTACAATGGT TCTTTAAGAA TGGAGCTTTG TTGTACCGGT
    CAGGGAAATC AGAAGGTCAA CCGATTAACT CCACGGGCTC GAACTTGCCT
    GCTGGAGGAT GCAATGATAT GGATTTCTGG ATAGATCTTC CTGAAGACGA
    AGAAGCAAAG AGTAATCTCA AGAAAGGAAA CCTTGAAAGC TCGGAGCTTT
    ACGTTCATGT GAAACCAGCA CTTGGTGGAA CTTTCACCGA CATCGTTATG
    TGGATTTTCT GCCCCTTTAA TGGCCCAGCC ACGCTCAAAA TCGGCCTATT
    CACGTTACCT ATGACCCGCA TAGGAGAACA TGTCGGTGAT TGGGAACATT
    TCACTTTCCG CATATGTAAT TTCTCTGGTG AGCTTTGGCA AATGTTCTTT
    TCTCAGCATA GTGGTGGTGG TTGGGTTGAT GCATCAGATA TTGAGTTTGT
    GAAAGATAAC AAACCGGCTG TGTACTCATC TAAACACGGA CATGCGAGTT
    TCCCTCATCC AGGAATGTAC CTCCAAGGCT CGTCAAAGCT CGGGATTGGA
    GTCAGAAACG ATGTTGCAAA AAGCAAGTAC ATTGTGGATT CAAGCCAAAG
    GTATGTGATA GTAGCAGCTG AGTATTTAGG TAAAGGAGCT GTGATAGAGC
    CGTGCTGGTT ACAGTATATG AGAGAATGGG GTCCGACCAT TGCATATGAT
    TCAGGGTCTG AGATCAATAA GATCATGAAT CTTCTTCCTT TGGTTGTTAG
    GTTCTCTATT GAGAACATTG TTGATTTGTT TCCCATTGCT CTTTATGGAG
    AAGAAGGTCC CACAGGGCCA AAGGAGAAAG ATAACTGGGA AGGAGATGAG
    ATGTGCTGAA AGAAGACAAA CCTCTTTGTG ATCAAGACGG TTTAATGGAA
    GATGAAGTCT CTTGTTGAAT CGGAGGGTTT TGATCTCTAC TCTACTAGTA
    ATTGTGACTA ATATGTAATT TACAGTATAC TAGAATAGGG TTTGATCTTG
    GTGGTTGTAA TTTGTTGATG TAAGACCTAA AACGCTGTGT TTGCGGCTGT
    AATCAGCTGC GACAGCTCAT GAGCAATATG AATGATTGAT TTTGTTGT

    Gene models with high sequence identity

    1. AT3G04350.1 [+] show detail - Plant protein of unknown function (DUF946)
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PRE-MRNA PROCESSING-RELATED 0
    HMMPanther PRE-MRNA PROCESSING PROTEIN PRP39-RELATED 0
    HMMPfam Protein of unknown function DUF946 8.5e-264

    See the detailed result >

    AT3G04350.1

    Model type
    Protein coding
    Short Description
    Plant protein of unknown function (DUF946)
    Computational Description
    Plant protein of unknown function (DUF946); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946 (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF946) (TAIR:AT5G18490.1); Has 389 Blast hits to 369 proteins in 101 species: Archae - 0; Bacteria - 21; Metazoa - 15; Fungi - 143; Plants - 203; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR