F28708

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28708

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28708

Determination of introduced cDNA(s)

  • RAFL09-67-A06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-67-A06 - Resource: pda08655

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-67-A06 - full reading 
    AGACGAATGA GATCGGCAAC AAGAGCGTAA ACCCTAGCAG CAGACACAAC 
    ACGAGTTCAT CGAGAAGCAA GATGACTTTC AAGCGAAGGA ACGGTGGGAG 
    GAACAAGCAC AACAGAGGAC ACGTCAACCC AATCAGATGC TCCAACTGTG 
    GCAAATGTTG CCCCAAGGAC AAGGCCATTA AGAGGTTCAT TGTGAGGAAC 
    ATTGTGGAGC AGGCTGCTAT TAGAGATGTT CAGGAAGCTA GCGTCTATGA 
    GGGATACACA TTTCCGAAGC TATATGCAAA GACGCAATAC TGTGTCTCCT 
    GTGCTATCCA CTCTCATGTC GTTAGAGTCC GTTCCCGCAC CAACCGCAGG 
    GTTCGTACTC CTCCACCTCG TTTCGCCAGA CGCAAGGAGG ATACTCCCAA 
    GCCTGGGCAA CCAGGACAGG CACCTCGTCC TGCTGGACCT GGAGCTGCAG 
    CTGCAGCTGC ACCGCGTGTC TGAAGCCTTC AAGCAGAGCT TTCTGTCTTG 
    TTTTCCTATG TTCTTGTTAC GTCTTTAAGG ATGTTTGTCT CTGTTTAACA 
    TAGTTTTGCC ATGTGGATCT TGAATTCTGT CAAACTATTT CAATAGTTGA 
    TTCAACT

    Gene models with high sequence identity

    1. AT2G40510.1 [+] show detail - Ribosomal protein S26e family protein
      E-value: 0; Score: 99.84

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribosomal protein S26e 6.5e-53
    PatternScan Ribosomal protein S26e 0
    HMMPanther Ribosomal protein S26e 7.1e-92

    See the detailed result >

    AT2G40510.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein S26e family protein
    Computational Description
    Ribosomal protein S26e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, ribosome, chloroplast; CONTAINS InterPro DOMAIN/s: Ribosomal protein S26e (InterPro:IPR000892); BEST Arabidopsis thaliana protein match is: Ribosomal protein S26e family protein (TAIR:AT2G40590.1); Has 766 Blast hits to 766 proteins in 272 species: Archae - 53; Bacteria - 0; Metazoa - 312; Fungi - 152; Plants - 120; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR