F28723

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28723

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28723

Determination of introduced cDNA(s)

  • RAFL06-08-M19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-08-M19 - Resource: pda02906

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-08-M19 - full reading 
    TGACAGAGAC AACAAACTAA AGTTGGTGGT GATAGAGTGA GAGAGAAACA 
    TGGAAGGCAA AGAAGAAGAC GTCAATGTTG GAGCCAACAA GTTCCCAGAG 
    AGACAGCCGA TCGGTACGGC GGCTCAGACG GAGAGCAAGG ACTATAAGGA 
    ACCACCACCG GCGCCGTTTT TCGAACCCGG CGAGCTCAAA TCTTGGTCTT 
    TCTACAGAGC AGGGATAGCT GAGTTCATAG CCACTTTCCT TTTCCTCTAC 
    GTCACCGTTT TGACAGTCAT GGGTGTTAAG AGAGCTCCCA ATATGTGTGC 
    CTCTGTTGGA ATCCAAGGCA TCGCTTGGGC TTTTGGTGGC ATGATCTTTG 
    CTCTTGTTTA CTGTACTGCT GGAATCTCAG GAGGACATAT TAATCCGGCG 
    GTGACTTTTG GTTTGTTCTT GGCGAGGAAG CTATCTTTAA CCAGAGCTCT 
    GTTCTACATA GTAATGCAGT GCCTTGGAGC TATATGTGGT GCTGGTGTGG 
    TTAAAGGGTT TCAACCAGGG CTGTACCAGA CGAATGGCGG TGGAGCTAAT 
    GTGGTGGCTC ATGGTTACAC AAAGGGTTCA GGTCTTGGTG CAGAGATTGT 
    TGGAACTTTT GTTCTGGTTT ACACTGTTTT CTCAGCTACT GATGCTAAGA 
    GAAGTGCCAG AGACTCTCAT GTCCCTATCT TGGCTCCGCT TCCAATTGGG 
    TTTGCTGTCT TCTTGGTGCA CTTGGCTACC ATCCCAATTA CTGGAACTGG 
    CATTAACCCG GCCAGGAGTC TCGGAGCTGC CATCATCTAC AACAAGGATC 
    ATGCTTGGGA TGACCATTGG ATCTTCTGGG TCGGTCCATT CATTGGTGCT 
    GCGCTTGCTG CTCTGTACCA TCAGATAGTC ATCAGAGCTA TTCCTTTCAA 
    GTCCAAGACA TAAAGTTTCC TACATATTCT CTGATCATCA TCAAGCTAAG 
    AATATATCAA TCTTTAATTC TATATGCTTT CTTCTTGTTT CCTATGTCAT 
    GTGTGATGAT CTCTATATGT ACCACTAGAG CTTTGATCTT GTAACAGTGT 
    AAATGTGTAA TCTATTATGT ATCAATGGCA TTGTATCTTG TAACATTAAT 
    TATGTCAATG GAAGAATACA TTGTG

    Gene models with high sequence identity

    1. AT4G23400.1 [+] show detail - plasma membrane intrinsic protein 1;5
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Major intrinsic protein 8e-71
    FPrintScan Major intrinsic protein 8e-71
    FPrintScan Major intrinsic protein 8e-71
    FPrintScan Major intrinsic protein 8e-71
    FPrintScan Major intrinsic protein 8e-71
    FPrintScan Major intrinsic protein 8e-71
    superfamily Major intrinsic protein 6.7e-61
    HMMTigr Aquaporin 1.3e-96
    HMMPanther AQUAPORIN-RELATED 3e-196
    HMMPanther Major intrinsic protein 3e-196
    Gene3D Major intrinsic protein 5.6e-64
    PatternScan Major intrinsic protein, conserved site 0
    HMMPfam Major intrinsic protein 2.8e-85

    See the detailed result >

    AT4G23400.1

    Model type
    Protein coding
    Short Description
    plasma membrane intrinsic protein 1;5
    Computational Description
    plasma membrane intrinsic protein 1;5 (PIP1;5); FUNCTIONS IN: water channel activity; INVOLVED IN: response to salt stress, transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1;4 (TAIR:AT4G00430.1); Has 10720 Blast hits to 10702 proteins in 2215 species: Archae - 88; Bacteria - 5150; Metazoa - 1472; Fungi - 448; Plants - 2512; Viruses - 2; Other Eukaryotes - 1048 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR