F28727

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28727

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28727

Determination of introduced cDNA(s)

  • RAFL04-19-D23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-19-D23 - Resource: pda00650

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-19-D23 - full reading 
    AACATTGTCT TTTCGGGTTA ATTTCTTCTT CTTCTTCCTT TTCTTACTAA 
    ATTCTCTTAG GTAGTTGTCG ATTCGATTTC TTTGTCTTCC TCTTCGCTTA 
    TTTTCGTTGA ATCTCTTGTT TACACCTTTT CCTGAAAACA AAATTGTGTT 
    TTTTGTAGGG TTTTAGTCAT ACTTAATGGC TTCCAATTCG GAGAAAAATC 
    CTCTTCTTTC AGATGAGAAA CCCAAATCGA CGGAGGAGAA TAAGAGTTCT 
    AAGCCGGAAT CAGCTTCTGG GAGTTCAACT TCATCAGCTA TGCCTGGCTT 
    GAATTTCAAT GCTTTTGATT TCTCTAATAT GGCTAGTATT CTCAACGATC 
    CTAGCATCAG AGAAATGGCT GAGCAAATAG CTAAAGATCC TGCGTTTAAC 
    CAATTGGCTG AGCAGCTTCA GAGATCTATT CCTAACGCTG GCCAGGAAGG 
    TGGTTTCCCT AACTTTGATC CTCAACAGTA TGTCAATACA ATGCAACAGG 
    TTATGCATAA CCCTGAGTTT AAGACAATGG CCGAGAAACT TGGTACCGCC 
    TTAGTTCAGG ATCCACAAAT GTCTCCTTTT TTGGATGCTT TCTCGAATCC 
    TGAAACAGCA GAACACTTTA CTGAGCGTAT GGCGCGGATG AAAGAAGATC 
    CAGAGTTGAA ACCTATACTA GATGAGATTG ATGCTGGTGG TCCTTCTGCC 
    ATGATGAAGT ACTGGAATGA TCCAGAAGTG CTGAAAAAGC TGGGTGAAGC 
    AATGGGTATG CCTGTTGCTG GCTTACCAGA CCAGACTGTT TCAGCTGAAC 
    CTGAGGTAGC AGAAGAAGGT GAAGAAGAAG AGTCTATTGT TCACCAAACT 
    GCCAGTCTTG GTGATGTTGA GGGTTTGAAA GCTGCCTTGG CATCTGGTGG 
    TAACAAAGAT GAAGAAGATT CTGAAGGAAG GACAGCATTG CATTTTGCTT 
    GTGGATACGG CGAGTTGAAA TGTGCTCAAG TTCTTATCGA TGCTGGAGCA 
    AGTGTTAATG CGGTTGACAA AAACAAGAAC ACACCTCTGC ATTATGCTGC 
    TGGTTACGGG AGGAAAGAGT GTGTAAGCCT TCTCCTGGAG AATGGTGCTG 
    CAGTCACTCT GCAAAACCTA GACGAGAAGA CGCCAATTGA TGTAGCGAAG 
    CTCAACAGCC AGCTGGAGGT GGTGAAGCTG CTTGAGAAGG ATGCTTTCCT 
    TTGAGCTCTG CTGGTTAAAG GAAAGCTCTA AGCTCATATT GTCTTTGAGG 
    CATTTGTCTT GTGTGTGTCC TGAACCAGTT TCACAGGCTT TTTGTGTACA 
    CTTTTTATTA GTTCCTCTCT TCTTCTAAAT TTGTCTCTTA TGTTGTTTTA 
    AAAGTCAATA AAGAAAGAAA TAGCAATCAA TGATTTAAT

    Gene models with high sequence identity

    1. AT4G35450.2 [+] show detail - ankyrin repeat-containing protein 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Ankyrin repeat 13.758
    ProfileScan Ankyrin repeat 12.529
    ProfileScan Ankyrin repeat-containing domain 34.349
    HMMSmart Ankyrin repeat 1300
    HMMSmart Ankyrin repeat 4.9e-05
    HMMSmart Ankyrin repeat 2.1e-05
    superfamily Ankyrin repeat-containing domain 3.9e-37
    Gene3D Ankyrin repeat-containing domain 8.6e-33
    HMMPfam Ankyrin repeat 3.2e-09
    HMMPfam Ankyrin repeat 3.6e-09
    Coil coiled-coil 0
    HMMPanther ANKYRIN REPEAT DOMAIN PROTEIN 2 (ATAKR2) 1.6e-51
    HMMPanther ANKYRIN REPEAT-CONTAINING 1.6e-51

    See the detailed result >

    AT4G35450.2

    Model type
    Protein coding
    Short Description
    ankyrin repeat-containing protein 2
    Curator Summary
    Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.
    Computational Description
    ankyrin repeat-containing protein 2 (AKR2); INVOLVED IN: in 6 processes; LOCATED IN: integral to chloroplast outer membrane, nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat-containing 2B (TAIR:AT2G17390.1); Has 85365 Blast hits to 29004 proteins in 1328 species: Archae - 144; Bacteria - 6951; Metazoa - 44906; Fungi - 6142; Plants - 3755; Viruses - 871; Other Eukaryotes - 22596 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR