F28733

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28733

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
stem (PO:0009047)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28733

Determination of introduced cDNA(s)

  • RAFL05-10-N19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-10-N19 - Resource: pda02495

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-10-N19 - full reading
    GACGCGATTG GGTAAGCGAT GCACATCGTC TTCTCTGTCG ATGATTTGAC 
    CGAATCCTTC TGGCCTGTTC CCGCTCCGGC GCCGTCGCCG GGATCGTCAT
    CGACTCCGTC ACCGACGCAG AACGTGGCGG ATGGGATGAC TCGAAGTCAA
    TCGGAGTGGG CGTTCCACAG GCTTATCAAT GAGTTGTCTG GTTCCGATTC
    GAGCCCTACG ACTAACACAA TCGAGAGATC ACCTCCACCG GTTCAGTCTC
    TTTCGAGATT AGAAGAAACC GTTGACGAAA CCGAAGATGT TGTTGAGATT
    CAGAAACCGC AGAATCATCG ACGGCTCCCT GTTGATGATC AAGGGAAGAA
    TCGGAATCGT GCTCCGTCGT CTGATCCGGT TGATTCTTCA GCTCCTGTTG
    TTGTTGATCC TAATCAGTAT CATGCGATTC TTAAGAGCAA GCTCGAGCTT
    GCTTGCGCTG CTGTTGCTCG TCGTGTGGGA ACTGTGAAAC CGGAAGATTC
    GAGTGCTTCA GCTAGCAATC AAAAACAAGC TCAAGGCTCC ATTGTGGCAC
    AAACCTCACC TGGTGCTTCA TCTGTTAGAT TTTCTCCCAC AACAAGCACG
    CAAAAGAAAC CTGATGTTCC AGCCAGACAA ACTAGTATTT CATCACGAGA
    TGATTCTGAT GACGATGATC TTGATGGAGA CGCAGATAAT GGAGATCCTA
    CTGATGTGAA GCGTGCTAGG AGGATGCTCT CAAACCGAGA ATCCGCTAGG
    CGCTCTAGGA GAAGAAAGCA AGAACAAATG AATGAATTTG ATACACAGGC
    CAATTAAGAG CCGAGCATTC AACTTTAATT AATCGTCTTA GTGACATGAA
    TCATAAGTAT GATGCAGCTG CTGTTGACAA CAGAATTCTA AGAGCTGATA
    TCGAAACTTT GAGAACAAAG GTTAAGATGG CAGAGGAAAC TGTGAAAAGA
    GTGACAGGAG TGAACCCTTT GCATTGGTCA AGACCAAACA TGGGCATACC
    ATTCAGCAAC ACACCGAGTG CTTCCTCTAG TATTCCGCCA AACTCTAACC
    ACATTTTGAA ACCAGCAAAT TCAAGTACCA ACACCAGTGC TGGTTTAGCA
    CAAAATCAGA GAGTGGAGAC GGCAAATTTC TTGCCGGAAC AGGTGAACCG
    TGAAGGCATG CAGAATCCAT TTGCTCCTGA TTCTAATCTG TATGAAACCC
    TACCCCATTG GAATCACAAG CATTAACCAG AAAAAGAGTC ATTGGTTTTG
    TGATTTTGAT TGAGGTAACT ATTGTCTGTA TTTTTATTTA CTGTATGACT
    CAGCGACGGT AAACTCTTAA TATTATATAT ATGATTGGAC ATGATGGAT

    Gene models with high sequence identity

    1. AT3G54620.1 [+] show detail - basic leucine zipper 25
      E-value: 0; Score: 99.70

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Basic-leucine zipper (bZIP) transcription factor 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    ProfileScan Basic-leucine zipper (bZIP) transcription factor 8.864
    HMMPfam bZIP transcription factor, bZIP-1 3.6e-08
    HMMPfam Basic leucine-zipper, C-terminal 1.3e-18

    See the detailed result >

    AT3G54620.1

    Model type
    Protein coding
    Short Description
    basic leucine zipper 25
    Curator Summary
    bZIP transcription factor-like protein mRNA
    Computational Description
    basic leucine zipper 25 (BZIP25); FUNCTIONS IN: protein heterodimerization activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616), Basic leucine-zipper, C-terminal (InterPro:IPR020983); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT4G02640.2); Has 2261 Blast hits to 2259 proteins in 207 species: Archae - 2; Bacteria - 16; Metazoa - 141; Fungi - 138; Plants - 1903; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR