F28735

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28735

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28735

Determination of introduced cDNA(s)

  • RAFL05-19-F14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-19-F14 - Resource: pda07433

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-19-F14 - full reading 
    AAGGGGAAAG AAATGAGCGC GACGCAGACG CAGACGCATG GACCGCACTC 
    GCTGGCCTTC AGGGTGATGC GACTCTGCAA ACCGTCTTTC CACGTCGATC 
    CTCCCCTCCG CATTGACCCT TTCGATCTTC TCGCCGGCGA GGATTTCTCC 
    GACGATCCCT CTTCCGCCTC CTTGTTCCGC CGCCACGTAT CTTCTGCCGA 
    CGCTGTCGAC TCCGATCTCA GCTACCGAAA TAGATTCCTC CTCAACCATC 
    CTACCGATCC AATCGGTCTC TCTGGTCTTC TGCTTCTTCC TCAGTCCTTC 
    GGAGCGATCT ATCTCGGAGA AACATTCTGT AGCTATATCA GCGTCAACAA 
    TAGTTCCACT TCAGAAGTTC GGGATGTTAC CATTAAGGCA GAAATTCAGA 
    CAGAGAGGCA GAGGATTCTA CTTCTGGATA CATCCAAGTC ACCTGTTGAA 
    TCGATACGGA CAGGTGGACG CTATGATTTC ATAGTTGAAC ACGATGTGAA 
    AGAGCTTGGA GCTCACACGT TGGTTTGCTC TGCATTGTAC AATGACGCTG 
    ATGGTGAGCG TAAATATCTT CCCCAGTTTT TCAAGTTTGT CGTTGCAAAC 
    CCACTCTCAG TGAGGACCAA GGTTCGAGTT GTAAAGGAGA CGACATTTTT 
    AGAGGCTTGC ATTGAGAACC ATACAAAAGC AAACCTCTTT ATGGACCAAG 
    TTGATTTTGA ACCTGCTAAG CAATGGAGTG CTGTAAGATT ACAGAATGAA 
    GACTCAACAG AAGATCCTCC AACCAGTGGT CTTAGTGGAC TGATACCTAA 
    ACCGCCAGTT ATAATCCGAT CTGGCGGGGG TATCCACAAC TATCTCTACA 
    AGTTAAACCC ATCTGCAGAT GTTTCCGGGC AAACAAAATT CCAGGGAAGT 
    AATATCCTGG GTAAATTTCA AATAACATGG CGCACAAATT TGGGTGAACC 
    TGGTCGCTTA CAAACACAAC AAATTCTCGG CGCTCCAGTA AGCCGTAAAG 
    AGATTAATAT GCGAGTTGTA GAGGTTCCAG CTGTTATACA CTTAAATAGA 
    CCCTTTCGGG CATACTTGAA TCTCACAAAC CAAACTGATA GGCAACTGGG 
    ACCCTTCGAG GTCTCACTGT CACAAGATGA AACACAATTG GAGAAGCCGG 
    TTGGTATTAA TGGTCTCCAG ACTCTGATGT TACCCAGGAT TGAAGCATTT 
    GGCTCCAATG ATTTCCAATT GAATCTTATT GCCTCCAAGC TGGGAGTCCA 
    GAAAATCGCT GGGATCACGG CCTTGGACAC AAGAGAGAAA AAAACCTACG 
    AACTTGTTCC AGATATGGAG ATATTTGTAG AGACAGACTA AGTTATAAGA 
    CAGCCTCCCC GAGTGGTGTT CTTCCTCGAC AGGTTTTGTT ATTGCACCTC 
    CTCTGTGTTG TTAATTGTTT TTGTTTCTTA GTAGAAAATA ATTTGGCTCC 
    TTTGTAGAAG AAGAAAAAAA CTAAACGGCT TTAACATATG GACTACGCCG 
    TTTGTATCTT GTTGTTACAA ACCATTAAAC GTTACTGTTT GATCAATATG 
    TTAATTCAGA ACTGTTTGGT TTAAAGCGAA AAAAAAAAAA AAAA

    Gene models with high sequence identity

    1. AT2G47960.1 [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF974 (InterPro:IPR0103...
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF974 5.1e-81
    HMMPanther gb def: Expressed protein (Hypothetical prote 0
    HMMPanther Protein of unknown function DUF974 0

    See the detailed result >

    AT2G47960.1

    Model type
    Protein coding
    Computational Description
    unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF974 (InterPro:IPR010378); Has 285 Blast hits to 284 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 150; Fungi - 68; Plants - 32; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR