F28742

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28742

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28742

Determination of introduced cDNA(s)

RAFL09-14-K11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-14-K11 - Resource: pda01675

full reading [+] show sequence

AAGAAGGAAG ACGATGATGA TGCTCAGAAT CCGAAGCAGA GATGGACTGG 
AGAGAGTCAC AGCGGAGGGA GCTCATATCA CTGTTTCCCA GCTCAAAACC 
TTGATCGCGG ATCAGCTTCA GATCCCTCTC CATAAGCAGA CCTTATCCAC 
CAATCGTGAT CTCCTCCTCG CCAAAACTCC CGCTGATCTA CTCGCCTTCA 
CCGACCTCAC GGACCCAAAC CTCCCCCTCT CCTCTCTCAA CCTCGGCCAT 
GGCTCTATGC TCTACCTCGC CTACGATGGC GAGCGCTCCA TTCCTGGAGC 
TCCTCCCGTT ACTCCTGCCG GATCCTTCGG GAGGAAGATG ACCGTCGATG 
ACTTGATCGC CCGCCAGATG CGCGTCACTC GTCAGGAGAC GTCTCACTGC 
GACTCCGTCT CCTTCGATCG CGATGCCGCC AACGCTTTCC AGCACTACGT 
CAATGAGTCT CTAGCTTTTG CCGTCAAGCG CGGCGGCTTT ATGTACGGCA 
CCGTCACCGA GGAAGGACAG TGGAAGTTGA TTTCATTTAC GAGCCGCCCC 
AGCAAGGCAC GGAGGCTAAT CTTATTCTGA TGAGAGATGC TGATGAAGAG 
AAGCGCGTGG ACGCAATCGC CATGGGCTTG GGGATGAGGA GGGTCGGTTT 
CATTTTTAAC CAGACCGTGG TGCAGGACAA GACTGAATAC ACTCTGTCCA 
ACGCCGAGGT GCTACAGGCG GCGGAGCTTC ACGCCGAGAG CGAGCTGAAG 
GAGTGGGTCA CGGCGGTGGT GAAGCTTGAG GTGAATGAGG ATGGTGGCGC 
CGATGTCCAT TTCGAGGCGT TTCAAATGAG TGATATGTGC ATCAGGCTGT 
TCAAGGAAGA GTGGTTCGAG ACGGAGATTA TGCCGGACGA TGATCCAAAG 
CTCTCTAAGA TGAAGAAGGA GGTGGTTGTT GGTGTGAAGG ATCTTAAGGA 
GGTAGATAAC GATTTCTTCC TCGTTCTCGT CAGGATCTTG GATCACCAGG 
GGCCTCTGTC ATCAACATTC CCAATAGAGA ACCGGAGCAG TCGAGCAACG 
ATGCGGGCTC TAAAAACACA TCTGGACCGG GCAAAGAGCT TGCCGTTGGT 
GAAGAAGATG TCAGATTTTC ATCTGCTTCT CTTTGTGGCT CAGTTTCTGG 
ACGTGTCATC GGACGTCCCT GCTTTAGCCG AGTGTGTGCG TCTGCAGTCG 
CCTGTCCCAG AGGGCTATGC GTTGCTCATC GAATCAATGG CCAACACTTG 
TTAATTTTTG TGTCATTGTT TTTTGGTTCT TGATACAGTA TATCATGTTC 
GTTTTATGGT CCAGAAAATC TTTTTTACTA GTTGACAAAT GAAAAATCTC 
TAGTGTACTC GG

Gene models with high sequence identity

AT2G47970.1 [+] show detail - Nuclear pore localisation protein NPL4
E-value: 0; Score: 99.93

InterPro Scan Digest

Program	Description	E-value
HMMPfam	NPL4	1.8e-51
HMMPfam	UN_NPL4	1.4e-07
HMMPanther	NUCLEAR PROTEIN LOCALIZATION 4	2e-65
HMMPanther	NUCLEAR PROTEIN LOCALIZATION 4	5.8e-93
superfamily	Ubiquitin-like	2e-09

See the detailed result >

AT2G47970.1

Model type: Protein coding
Short Description: Nuclear pore localisation protein NPL4
Computational Description: Nuclear pore localisation protein NPL4; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPL4 (InterPro:IPR007717); BEST Arabidopsis thaliana protein match is: NPL4-like protein 1 (TAIR:AT3G63000.1); Has 392 Blast hits to 392 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 106; Plants - 67; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
Link: InterPro Scan - TAIR