F28742

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28742

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28742

Determination of introduced cDNA(s)

  • RAFL09-14-K11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-14-K11 - Resource: pda01675

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-14-K11 - full reading
    AAGAAGGAAG ACGATGATGA TGCTCAGAAT CCGAAGCAGA GATGGACTGG 
    AGAGAGTCAC AGCGGAGGGA GCTCATATCA CTGTTTCCCA GCTCAAAACC
    TTGATCGCGG ATCAGCTTCA GATCCCTCTC CATAAGCAGA CCTTATCCAC
    CAATCGTGAT CTCCTCCTCG CCAAAACTCC CGCTGATCTA CTCGCCTTCA
    CCGACCTCAC GGACCCAAAC CTCCCCCTCT CCTCTCTCAA CCTCGGCCAT
    GGCTCTATGC TCTACCTCGC CTACGATGGC GAGCGCTCCA TTCCTGGAGC
    TCCTCCCGTT ACTCCTGCCG GATCCTTCGG GAGGAAGATG ACCGTCGATG
    ACTTGATCGC CCGCCAGATG CGCGTCACTC GTCAGGAGAC GTCTCACTGC
    GACTCCGTCT CCTTCGATCG CGATGCCGCC AACGCTTTCC AGCACTACGT
    CAATGAGTCT CTAGCTTTTG CCGTCAAGCG CGGCGGCTTT ATGTACGGCA
    CCGTCACCGA GGAAGGACAG TGGAAGTTGA TTTCATTTAC GAGCCGCCCC
    AGCAAGGCAC GGAGGCTAAT CTTATTCTGA TGAGAGATGC TGATGAAGAG
    AAGCGCGTGG ACGCAATCGC CATGGGCTTG GGGATGAGGA GGGTCGGTTT
    CATTTTTAAC CAGACCGTGG TGCAGGACAA GACTGAATAC ACTCTGTCCA
    ACGCCGAGGT GCTACAGGCG GCGGAGCTTC ACGCCGAGAG CGAGCTGAAG
    GAGTGGGTCA CGGCGGTGGT GAAGCTTGAG GTGAATGAGG ATGGTGGCGC
    CGATGTCCAT TTCGAGGCGT TTCAAATGAG TGATATGTGC ATCAGGCTGT
    TCAAGGAAGA GTGGTTCGAG ACGGAGATTA TGCCGGACGA TGATCCAAAG
    CTCTCTAAGA TGAAGAAGGA GGTGGTTGTT GGTGTGAAGG ATCTTAAGGA
    GGTAGATAAC GATTTCTTCC TCGTTCTCGT CAGGATCTTG GATCACCAGG
    GGCCTCTGTC ATCAACATTC CCAATAGAGA ACCGGAGCAG TCGAGCAACG
    ATGCGGGCTC TAAAAACACA TCTGGACCGG GCAAAGAGCT TGCCGTTGGT
    GAAGAAGATG TCAGATTTTC ATCTGCTTCT CTTTGTGGCT CAGTTTCTGG
    ACGTGTCATC GGACGTCCCT GCTTTAGCCG AGTGTGTGCG TCTGCAGTCG
    CCTGTCCCAG AGGGCTATGC GTTGCTCATC GAATCAATGG CCAACACTTG
    TTAATTTTTG TGTCATTGTT TTTTGGTTCT TGATACAGTA TATCATGTTC
    GTTTTATGGT CCAGAAAATC TTTTTTACTA GTTGACAAAT GAAAAATCTC
    TAGTGTACTC GG

    Gene models with high sequence identity

    1. AT2G47970.1 [+] show detail - Nuclear pore localisation protein NPL4
      E-value: 0; Score: 99.93

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam NPL4 1.8e-51
    HMMPfam UN_NPL4 0.00000014
    HMMPanther NUCLEAR PROTEIN LOCALIZATION 4 2e-65
    HMMPanther NUCLEAR PROTEIN LOCALIZATION 4 5.8e-93
    superfamily Ubiquitin-like 0.000000002

    See the detailed result >

    AT2G47970.1

    Model type
    Protein coding
    Short Description
    Nuclear pore localisation protein NPL4
    Computational Description
    Nuclear pore localisation protein NPL4; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPL4 (InterPro:IPR007717); BEST Arabidopsis thaliana protein match is: NPL4-like protein 1 (TAIR:AT3G63000.1); Has 392 Blast hits to 392 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 106; Plants - 67; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR