F28744

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28744

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28744

Determination of introduced cDNA(s)

  • RAFL09-09-J21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-09-J21 - Resource: pda05277

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-09-J21 - full reading 
    AAAACTCACA TCTATCTCTA TCTCTCTTCT CTGTCTCTCA CTCTCCACTT 
    TCCGATCACC GACGATTCAA CAAAACATAG TAAAAAACAA AGCAAATTCT 
    TTTTTTCTCC TTAGTTACTT CTTCTACAGA TTATCTCAAT CTTACAGAGC 
    ACCATGGATC GTTGTATCTA TGGTTGCTCC GTCATTACTA TCTTCTTCTC 
    CTTCTTCTTC CTCCTCAATG CATCCGCTTT AGAATCGGGT CACCACAACA 
    TAACTGGGTC GGGTCAAATA AACTCAAACT CCGTCCTCGT AGCTCTCCTC 
    GATTCTCGTT ACACTGAACT CGCCGAGCTA GTTGAGAAGG CTCTTCTTCT 
    CCAAACCCTC GAAGACGCCG TTGGTCGTCA CAATATTACT ATTTTCGCCC 
    CACGCAATGA AGCACTCGAG CGTGACCTTG ACCCGGATTT TAAACGGTTC 
    TTGCTCCAAC CAGGTAACCT CAAATCTCTC CAAACGCTTC TCTTGTCTCA 
    CATTATCCCC AAACGAGTCG GGTCAAACCA ATGGCCTGAG GAGAATTCGG 
    GTCGGGTCAA ACACGTCACG TTAGGGCATG ACCAAGTGCT GCATTTGAGT 
    AAACTCAAAG GAACAAATGG AAAGAGATTG GTGAATTCCG CTGTAATTAC 
    CCGACCCGAT GATTTAACCC GACCCGACGG GTTGATCCAC GGAATCGAAC 
    GGCTTTTAAT CCCTCGTTCC GTTCAAGAAG ATTTCAACCG ACGGAGAAAT 
    CTCCGATCAA TCTCCGCCGT ATTACCCGAA GGAGCTCCGG AAATCGACCC 
    GAGAACCAAC CGTCTCAAGA AATCTGCCAC CGCCGTCTCA GTACCCGCCG 
    GATCTCCACC AGTGCTTCCG ATTGAATCCG CTATGGCTCC AGGTCCATCG 
    CTAGCTCCGG CTCCGGCTCC AGGACCTGGA GGTGCACACA AACATTTCAA 
    CGGCGATGCT CAGGTCAAAG ATTTCATCCA CACATTGTTA CATTACGGTG 
    GATACAACGA AATGGCGGAT ATTCTCGTGA ATCTGACGTC ACTTGCGACG 
    GAGATGGGTC GATTGGTGTC AGAAGGTTAC GTCCTCACCG TGTTAGCTCC 
    GAACGATGAA GCTATGGGGA AATTAACGAC TGATCAGCTT AGCGAGCCCG 
    GAGCTCCGGA GCAAATTATG TATTACCACA TTATTCCAGA GTATCAGACG 
    GAGGAAAGCA TGTATAATTC TGTTAGGAGA TTTGGGAAGG TGAAGTATGA 
    AACGCTGCGT TTTCCTCACA AGGTTGGGGC TAAAGAAGCT GATGGCTCGG 
    TTAAATTCGG TTCTGGTGAC CGGTCGGCTT ATTTGTTTGA TCCGGATATT 
    TACACCGATG GTCGCATTTC GGTTCAGGGG ATTGATGGTG TTTTGTTCCC 
    AGAGGAGAAG GAAGAAGAGA CGGTTAAGAA ACCGACCGGT CCGGTTAAGA 
    AAGTTGTTCA GCCGAGAAGA GGGAAGTTGC TGGAAGTAGC ATGTAGTATG 
    CTTGGAGCTA TTGGGAAGGA CTCATATCTA AGCAGATGCT GATGAATTCA 
    CAAACCTGAA GAGATTATTG AAGGAAAATC TCTCAAGTGT TATCTGTAAA 
    CACACACAAA AGGTTCTTTG GAGCAGAATG AAAGATTTAG AAGAAGAGCA 
    G

    Gene models with high sequence identity

    1. AT3G11700.1 [+] show detail - FASCICLIN-like arabinogalactan protein 18 precursor
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart FAS1 domain 8.5e-16
    HMMSmart FAS1 domain 5e-16
    superfamily FAS1 domain 1.2e-21
    superfamily FAS1 domain 6.3e-19
    ProfileScan FAS1 domain 16.763
    ProfileScan FAS1 domain 9.349
    HMMPfam FAS1 domain 4.7e-21
    HMMPfam FAS1 domain 1.9e-06

    See the detailed result >

    AT3G11700.1

    Model type
    Protein coding
    Short Description
    FASCICLIN-like arabinogalactan protein 18 precursor
    Computational Description
    FASCICLIN-like arabinogalactan protein 18 precursor (FLA18); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cyclopentenone, cell adhesion; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 17 precursor (TAIR:AT5G06390.1); Has 488 Blast hits to 470 proteins in 128 species: Archae - 2; Bacteria - 195; Metazoa - 32; Fungi - 4; Plants - 192; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR