F28801

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28801

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28801

Determination of introduced cDNA(s)

  • RAFL05-20-N18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-20-N18 - Resource: pda02804

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-20-N18 - full reading 
    ATCTCACTTT CTCCATCTTA AAACTCTTTC TTGTATTTAT TTTCCTCCCA 
    AAAAACATCT TTAAGAGTCC TCATGGCGAT GTCTTTATCA GGAGCTGTTC 
    TCAGTGGCAT GGGTTCTTCT TTCCACAACG TAGGAGCAAA GCAGAGTGGT 
    GTTGGTACCG TCAGAGTTGG CCGGAAGAGT GAGCTCGTCG TCGTTGCTCA 
    GCGCAAGAAG TCGTTGATAT ACGCCGTTAA AAGTGACGGC AACATCCTCG 
    ATGACCTCAA CGAAGCCACA AAGAAAGCTT CTGATTTCGT GACGGATAAG 
    ACGAAGGAGG CCTTGGCGGA TGGCGAGAAA ACAAAAGACT ACATTGTTGA 
    GAAAACCATT GAAGCCAATG AAACTGCGAC TGAGGAAGCT AAGAAAGCTT 
    TGGATTATGT GACTGAGAAA GGAAAAGAAG CCGGAAATAA GGCGGCTGAG 
    TTCGTAGAGG GTAAAGCAGA AGAGGCTAAG AATGCCACAA AGTCCTGATT 
    CAACCACTCA TGTAGTCATG TTCAATAGTT TACAATAAGA TCAGTTTGTT 
    GTAATTTCTT TTTCACCATT TGAAATGAAG AGCTGTTAAT TACAGAAAAA 
    AAAAAAAAAA A

    Gene models with high sequence identity

    1. AT2G42530.1 [+] show detail - cold regulated 15b
      E-value: 0; Score: 99.83

     

    InterPro Scan Digest

    See the detailed result >

    AT2G42530.1

    Model type
    Protein coding
    Short Description
    cold regulated 15b
    Computational Description
    cold regulated 15b (COR15B); INVOLVED IN: response to cold, defense response to fungus; LOCATED IN: chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: cold-regulated 15a (TAIR:AT2G42540.2); Has 194 Blast hits to 148 proteins in 43 species: Archae - 0; Bacteria - 18; Metazoa - 5; Fungi - 6; Plants - 155; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR