F28811

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28811

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28811

Determination of introduced cDNA(s)

  • RAFL06-11-E12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-11-E12 - Resource: pdz87580

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-11-E12 - 5 prime EST 
    TAAAACTCTT TCTCTGCAAG AAAACCAATC TCTCTCTCTT TCACTTTCTT 
    AAACCCTTTA TCTCTCTAAA ACCCTCCTTT TTAGGTAAAA AAGTTTTGGT 
    GCCTGACTCA AAAAAGGTTG GGTCTTTTAC TGCATTTTGA AATGGCGATT 
    GAAGATTACG AGAACCCAAA TCGAGAAATC AAACCTAAGA ACAGAAGATT 
    CATGGAAGGA GAGAATCAGT GGCCTATATG GCTCAAACCT TTACTAAACC 
    AACACTTTTT TGCTCAATGC AAGTTTCATG GACACTTACC TAGAACCGAA 
    TGCAAAATGT ATTGCTTAGA CTGTACCAAT GACTCGTTTT GTTCTCTCTG 
    TCTTTCTGAA CACGAGAATC ATCGTACCAT TCAGATAAGG ATATCATCTT 
    ATCATAATGT GACAAAGGTC GATGAGATAC AGAAATACTT AGACATATCA 
    AGCATTCAGA CATATGTGAT CAATAGCTCA AAGGTTTTGT TCTTGAATGA 
    GAGGCCTCAG TCTAAGCCTG GTAAAGGTTT TACTAATGCC TGCATGGTCT 
    GTTATCGTGG CCTTGCCGAA AACTGCTTCC GCTTCTGCTC TATTGGCTGC 
    AAGGTTGCAG GAACATCTGG AGTCTTCCAG AAGAGAGTGA AGCATACA

    Gene models with high sequence identity

    1. AT5G46710.1 [+] show detail - PLATZ transcription factor family protein
      E-value: 0; Score: 99.85

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-11-E12 - 3 prime EST 
    AACTAATTAT CTATTTTTGT CATATAATCT AATCAAAAAC AAAATTTAGA 
    ACAAGGAAAT AGTCATAAAA ACACCATAAA CCACTCACTG TCTAGTCTCA 
    TTGCATCACA CCAAAACTTT ACAAGAAGAT ATTGTATATA TATATATACA 
    C

    Gene models with high sequence identity

    1. AT5G46710.1 [+] show detail - PLATZ transcription factor family protein
      E-value: 5e-81; Score: 100.00

    AT5G46710.1

    Model type
    Protein coding
    Short Description
    PLATZ transcription factor family protein
    Computational Description
    PLATZ transcription factor family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734); BEST Arabidopsis thaliana protein match is: PLATZ transcription factor family protein (TAIR:AT4G17900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR