F28818

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	increased size (PATO:0000586) (Rosette leaf::Shape::large)
	stem (PO:0009047)	increased thickness (PATO:0000591) (Stem::Shape::thick) abnormal (PATO:0000460) (Stem::Others) present in fewer numbers in organism (PATO:0001997) (Stem::Number::few) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28818

Determination of introduced cDNA(s)

RAFL09-11-J07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-11-J07 - Resource: pda05405

full reading [+] show sequence

CTCACTACTC TCTCTCTCTC TCTCCTCTGT TCTAATTCTC TAGGAACAGA 
GTAAAAGACT TTGGCTCAGC TTCTGCCTCT CCAATGGCGG TTCTTCCGAC 
ATGGCTTTTA GCAATGATGT GTTTACTCTT CTTCGTCGGA GCTATGGAGA 
ACACTACACA CGACAACATC TCTTCTCTCC CTAGATCCGA CGAAACCGAA 
TGGAACCAAC ACGCAGTGAC GAATCCAGAT GAAGTAGCGG ACGAAGTTCT 
CGCCTTGACA GAAATGAGTG TGAGAAACCA TACCGAGAGG AGGAAACTAG 
GTTACTTTAC TTGCGGAACA GGAAACCCTA TCGACGATTG TTGGCGATGT 
GACCCCAATT GGCACAAGAA CCGTAAACGC CTAGCGGATT GCGGTATCGG 
ATTTGGAAGA AACGCGATCG GTGGTCGTGA TGGACGATTC TACGTAGTCA 
CTGACCCAAG AGACGACAAT CCGGTTAACC CTAGACCGGG GACTTTACGT 
CACGCCGTGA TCCAAGACCG ACCACTATGG ATCGTTTTCA AACGTGACAT 
GGTGATTCAG CTAAAACAAG AGCTTATCGT TAACAGTTTC AAAACGATCG 
ATGGACGTGG CGCAAACGTT CACATTGCTA ACGGTGGTTG CATCACGATT 
CAGTTTGTGA CGAATGTGAT CGTTCACGGA TTGCATATTC ATGACTGTAA 
ACCAACTGGT AACGCTATGG TGAGAAGCTC AGAGACGCAT TTTGGGTGGA 
GGACAATGGC AGATGGTGAC GCGATTTCGA TCTTTGGATC GAGTCATGTA 
TGGATTGATC ATAACTCGTT GTCCCATTGC GCTGATGGGC TTGTGGACGC 
AGTCATGGGC TCAACCGCGA TTACCATCTC TAACAACCAC TTAACTCACC 
ATAACGAGGT TATGTTGCTA GGACATAGTG ACTCGTACAT GAGGGACAAA 
GCTATGCAAG TGACCATTGC TTACAATCAT TTTGGAGTCG GACTTATTCA 
AAGAATGCCG AGGTGTCGAC ACGGGTACTT CCATGTTGTT AACAACGACT 
ACACTCACTG GGAAATGTAC GCAATAGGTG GTAGCGCAAA CCCGACAATC 
AACAGTCAAG GAAACCGCTA TGCCGCCCCA AAAAACCCCT TTGCTAAAGA 
GGTGACGAAG AGAGTGGACA CACCGGCTAG TCATTGGAAA GGATGGAATT 
GGAGATCGGA AGGAGATTTG CTTCAGAACG GTGCTTACTT CACTTCTTCA 
GGAGCCGCCG CGTCTGGCAG CTACGCACGT GCCTCCAGCC TTTCCGCGAA 
ATCTTCGTCA TTGGTCGGAC ACATTACTTC CGACGCTGGA GCTCTACCTT 
GTCGCAGAGG ACGTCAATGT TCCTCATAGT TACTACCCCA CCACCAAAAT 
TCAAAACCAT CTTCCATTAT ATTCAGACAA AAGTGTAAAT TTACACACAT 
TTGTCATTT

Gene models with high sequence identity

AT1G04680.1 [+] show detail - Pectin lyase-like superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Pectin lyase fold/virulence factor	7.6e-111
Gene3D	Pectin lyase fold	7.6e-104
FPrintScan	AmbAllergen	2e-83
FPrintScan	AmbAllergen	2e-83
FPrintScan	AmbAllergen	2e-83
FPrintScan	AmbAllergen	2e-83
FPrintScan	AmbAllergen	2e-83
FPrintScan	AmbAllergen	2e-83
FPrintScan	AmbAllergen	2e-83
FPrintScan	AmbAllergen	2e-83
HMMPfam	Pectate lyase/Amb allergen	1.3e-61
HMMSmart	Pectate lyase/Amb allergen	1.6e-103

See the detailed result >

AT1G04680.1

Model type: Protein coding
Short Description: Pectin lyase-like superfamily protein
Computational Description: Pectin lyase-like superfamily protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G13710.1); Has 1635 Blast hits to 1625 proteins in 268 species: Archae - 0; Bacteria - 682; Metazoa - 0; Fungi - 239; Plants - 706; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link: InterPro Scan - TAIR