F28843

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28843

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28843

Determination of introduced cDNA(s)

  • RAFL15-43-B06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL15-43-B06 - Resource: pda19248

    full reading [+] show sequence

    Nucleotide sequence: RAFL15-43-B06 - full reading 
    GTGTAGTCGG CGGCTGACGT TTTCTTTACC CTAACACTTT TGAAGCAACA 
    TAACAAACGC GCCGCGAATC CATTTTTAAG GGTTTAGAGA CTTTTAGGGT 
    TTACTTGAGA ACAGAGAGAT GGGGAAGAGC GAAAAGACGT CGTTGGGGCG 
    ATCACTCGTG AAGCACCACA ACCATATGAT ACAAGAATCC AAAGACAAAG 
    GCAAGTACTA CAAGAATCTA CAGAAGAAAG TTCTCGAATC TGTGACTGAG 
    GTCAGTGACA TCGACGCCAT CATTGAGCAA GCTGAGGAGG CAGAGCGTCT 
    TTACACCATT AATCACAGCT CCTCCACACC TTTGTCTATC AATCTAGACA 
    CAAATTCTAG CTCAAGTGTT ATAGCAGCTG AAGAATGGAG AGAGCAACAG 
    AAGATAGAGG AGGCTTTACA CGCCAGTAGT CTTCAAGTAC CTCGAAGACC 
    TCCGTGGACA CCTGAAATGT CAGTGGAAGA ACTTGATGCT AATGAAAAAC 
    AAGCTTTTCT AAATTGGCGC CGGATGCTTG TGAGCCTTGA GGAAAATGAA 
    AAGCTAGTGT TGACTCCATT CGAAAAGAAC CTTGACATCT GGAGACAGCT 
    TTGGAGAGTG CTTGAACGCA GTGATTTGAT TGTTATGGTA GTTGATGCTA 
    GAGATCCACT GTTTTACCGC TGCCCTGATC TTGAGGCATA TGCTCAAGAA 
    ATTGATGAGC ATAAAAAAAT AATGCTTCTA GTGAACAAGG CGGATCTTTT 
    ACCTACTGAT GTCAGGGAGA AATGGGCAGA ATATTTCCGC CTTAACAACA 
    TTCTGTTTGT TTTCTGGTCA ACCATAGCTG CTACAGCTAC CCTAGAAGGT 
    AAAGTCTTGA AAGAGCAATG GAGACAACCC GATAACTTGC AGAAGACAGA 
    TGATCCAGAC ATTATGATAT ATGGCAGAGA CGAGCTGTTG AGTCGTTTGC 
    AATTTGAGGC TCAAGAGATT GTCAAAGTAA GGAATTCTAG AGCAGCATCC 
    GTATCATCAC AGTCATGGAC TGGTGAATAT CAACGTGATC AAGCCGTGGT 
    TGGATTTGTT GGGTACCCAA ATGTTGGAAA GAGTTCTACA ATCAATGCAT 
    TGGTGGGTCA GAAGCGAACA GGTGTCACCT CTACCCCAGG AAAAACAAAG 
    CATTTCCAGA CTTTGATCAT CTCTGATGAG CTTATGCTAT GCGATTGCCC 
    TGGTTTAGTC TTCCCTTCGT TCTCAAGCTC AAGCTATTCA GGTGGTGGCT 
    GACAAGGTCC CTCGCCGTGT AATTGAGAGT GTGTACAACA TTTCTCTTCC 
    TAAACCCAAA ACCTATGAGC GTCAGTCCCG CCCGCCTCAT GCTGCAGAGC 
    TCTTAAAAAG TTACTGTGCT TCTCGTGGCT ATGTTGCCTC GAGTGGACTA 
    CCGGATGAAA CGAAAGCTGC AAGGCTGATT CTGAAAGATT ACATTGGAGG 
    TAAGCTGCCA CATTATGCAA TGCCACCTGG AATGCCCCAA GCTGATGAAC 
    CGGACATAGA AGACACTCAA GAACTGGAGG ATATTCTCGA AGGTTCAGAG 
    TCCGATGACT CTGCAGTAGG AGATGAGACA GAAAACGAGC AAGTTCCTGG 
    TATTGATGAT GTGCTAGATG ATCTGAGCTC GTTTGATCTT GCCAATGGGC 
    TTAAGTCTTC AAAGAAAGTG ACAGCAAAGA AGCAAACCGC GTCACATAAA 
    CAGCACAAAA AGCCACAGAG GAAAAAGGAT CGGACTTGGA GGGTTCAAAA 
    CACAGAAGAT GGAGATGGAA TGCCTTCTGT TAAAGTTTTC CAGAAACCAG 
    CTAACACAGG TCCTCTTACG ATGCGGTGAT TATCAAATTG TAGTCCATCC 
    AAGCAAAGAT GGCAACCGAA GCTACTTAAA GTTTTTTTTT TTTTTCAAAA 
    AATGTAACAG CAGTTGAACC TGTCGCAGTA GTTCTCGAGT GTCTTGATGT 
    TTTTGTTTTT ATGATTAAAG TCTTATTTTG GGGAAAAGTA GAAAAAAGTG 
    ACAACTCAAA TCTGGTGGAA AATGGAGAAT TGTTTTTGCC AGTTGGAGAT 
    ACCTATCGCT TTGTTTTGAG AATATAATAG CCATAAATAG AGTTTTCATG 
    TAAAAAA

    Gene models with high sequence identity

    1. AT1G08410.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
      E-value: 0; Score: 99.89

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 4.3e-39
    FPrintScan GTP1/OBG 9.4e-07
    FPrintScan GTP1/OBG 9.4e-07
    superfamily P-loop containing nucleoside triphosphate hyd 2.1e-36
    HMMPfam GTP-binding protein, HSR1-related 1.9e-09
    HMMPanther GTP-BINDING PROTEIN-RELATED 1.6e-80
    HMMPanther GTP-BINDING PROTEIN-RELATED 1.6e-80
    HMMPanther GTP-BINDING PROTEIN-RELATED 2.9e-28
    HMMPanther GTP-BINDING PROTEIN-RELATED 2.9e-28

    See the detailed result >

    AT1G08410.1

    Model type
    Protein coding
    Short Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Computational Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G27200.1); Has 7267 Blast hits to 7158 proteins in 1932 species: Archae - 109; Bacteria - 4700; Metazoa - 622; Fungi - 502; Plants - 285; Viruses - 0; Other Eukaryotes - 1049 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR