F28901

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28901

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28901

Determination of introduced cDNA(s)

  • RAFL06-81-K17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-81-K17 - Resource: pda17248

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-81-K17 - full reading
    GTCCTCTTCT TCTATATCCC TTTTTATCTC TTCGCAGCTT TCTCTCCTCT 
    CTCAGATCTA TACTCTCTTC TCCTTCACAA TCGTTCGTTT TATCCTCTCC
    ATCGGATTCG TCAGATATCT TCGATTTCTC GTCGTTTCAT CGGTTCCAGG
    TCAAATCCAG GGATTTGATC GTTGGTAAGC TATCTTTCAG CAAACATGCA
    TGGTTATGAA GATGACCTTG ATGAGGAAGC TGGGTATGAT GACTATTACA
    GCGGTGATGA GGATGAGTAT GAAGATGAGG AAGAGGAGGA TGAAGAACCT
    CCTAAGGAAG AATTGGAATT TCTTGAGTCA CGCCAAAAGT TGAAGGAATC
    AATTCGGAAG AAAATGGGAA ATGGAAGTGC TAATGCTCAA TCTTCACAAG
    AGAGAAGAAG AAAACTTCCT TATAACGACT TTGGTTCTTT CTTTGGTCCT
    TCACGGCCTG TTATTTCCTC AAGGGTTATA CAAGAAAGCA AATCCTTGCT
    TGAAAACGAG CTACGTAAAA TGTCGAATTC GAGCCAAACT AAGAAAAGAC
    CAGTTCCGAC GAATGGTTCA GGCTCTAAGA ATGTGTCACA AGAGAAGCGA
    CCTAAAGTTG TGAATGAGGT GAGAAGGAAA GTTGAGACTC TTAAGGATAC
    AAGAGACTAT TCGTTTTTGT TTTCCGATGA CGCGGAGCTT CCTGTTCCGA
    AGAAGGAATC TCTTTCACGA AGTGGCTCTT TTCCTAATTC TGAGGCTCGA
    TCTGCTCAAT TATCATCGAG GCCCAAACAA TCATCAGGTA TCAATGGTAG
    AACTGCTCAC AGTCCCCATC GTGAGGAGAA GAGACCTGTT TCAGCGAATG
    GACATTCAAG ACCGTCTTCC TCGGGCAGTC AAATGAATCA TTCAAGACCG
    TCTTCCTCTG GCAGTAAAAT GAATCATTCA AGACCGGCTA CCTCGGGCAG
    CCAAATGCCA AATTCAAGAC CAGCTTCCTC TGGCAGCCAA ATGCAGTCGA
    GAGCTGTCTC AGGCTCAGGG CGACCTGCTT CCTCAGGCAG CCAGATGCAA
    AATTCAAGAC CACAAAATTC AAGACCAGCT TCCGCTGGTA GCCAAATGCA
    GCAAAGGCCT GCGTCCTCAG GCAGCCAAAG GCCTGCGTCC TCAGGCAGCC
    AAAGGCCTGC GTCCTCAGGC AGCCAAAGGC CAGGTTCGTC GACAAACCGT
    CAAGCACCTA TGAGGCCACC AGGTTCAGGT TCCACAATGA ATGGTCAATC
    AGCCAACCGG AATGGCCAAC TGAATTCCAG ATCAGATTCC CGAAGATCAG
    CTCCTGCTAA AGTGCCAGTG GATCATAGGA AACAGATGAG CAGTAGCAAT
    GGAGTTGGTC CTGGTCGGTC AGCGACCAAT GCAAGACCTT TACCTTCTAA
    GAGTTCATTG GAAAGAAAAC CCTCAATCTC GGCGGGAAAG AGTTCTCTTC
    AAAGCCCTCA GAGACCGTCC TCATCAAGAC CAATGTCATC TGATCCTAGG
    CAACGGGTAG TAGAACAGAG AAAGGTTTCT CGTGACATGG CCACACCCCG
    AATGATACCT AAACAATCAG CGCCTACCTC GAAACACCAG ATGATGAGTA
    AACCAGCGCT CAAGAGACCT CCCTCGCGTG ACATAGATCA TGAAAGGAGG
    CTGTTGAAGA AGAAGAAGCC TGCAAGGTCA GAGGATCAAG AAGCATTCGA
    TATGCTTAGA CAGTTATTAC CACCCAAGCG GTTTTCTCGG TATGACGATG
    ATGACATAAA CATGGAAGCA GGCTTTGAAG ATATCCAAAA GGAAGAGAGA
    CGAAGTGCGA GAATCGCAAG GGAGGAAGAT GAAAGAGAAC TTAAGCTCTT
    AGAGGAAGAA GAAAGGAGAG AAAGACTGAA AAAGAATCGG AAGCTGAGCC
    GTTAGAAGAA TCCTTTCTCC TTTGTGTCTT TGTCTTCTTT TAGGACTTTT
    TTAGTGTTTT CTCATTGAAA TCTCTTTGGC CGCTTGAGGC AAAAAAGAGT
    TTGACCTTTT TTTTGTTTTG TGTTTTCAAA TTAAGGATCT TTTTTTTGTT
    CATGGAAAAA AAAAA

    Gene models with high sequence identity

    1. AT2G22720.3 [+] show detail - SPT2 chromatin protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Chromatin SPT2 4e-39
    Coil coiled-coil 0
    HMMPfam Chromatin SPT2 1.1e-27

    See the detailed result >

    AT2G22720.3

    Model type
    Protein coding
    Short Description
    SPT2 chromatin protein
    Computational Description
    SPT2 chromatin protein; CONTAINS InterPro DOMAIN/s: Chromatin SPT2 (InterPro:IPR013256); BEST Arabidopsis thaliana protein match is: SPT2 chromatin protein (TAIR:AT4G37860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR