F28906

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28906

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28906

Determination of introduced cDNA(s)

  • RAFL07-09-O18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-09-O18 - Resource: pda09498

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-09-O18 - full reading
    ATCATCATCA TCATTGATCG AGATCTCTCC GGCGACAAAA ACACAGCGAG 
    CGACTGACGA AAATTAAACA CTTCGCCGTC ACAGACACTC TCTCTATATA
    TATAATCTCC GGCGATGGAG AGTTTCGCTC TTCACTCTCT CTCCACCACC
    GCCACTTCCA CCTTACTCTC CCATCATCAT CATCACCATC CCTCACGTCT
    CTCTCTTCTC CGTCGTACCT CTTCGAGATC TCCGCCTTCA ACAATCTCCC
    TCCGATCTCT CTCCGTTCAA CCTCTCTCCT TCCCTCTTCT CAAACCAATT
    CCTCGATTCT CCACACGAAT CGCCGCCGCA CCGCAAGACA ACGCTCCTCC
    TCCTCCTCCC CCATCTCCGT CTCCGTCTCC GTCTCCTCAA GGAGCGAAAC
    TCATCCCTCT GATTCTCTCA ATCTCCGTCG GCCTAATCCT CCGATTCGCT
    GTTCCTGTAC CAGAAGGAGT CACACCACAA GGCTGGCAAT TACTCTCAAT
    CTTCCTCTCA ACAATCGCTG GTCTCGTCCT TAGTCCTCTC CCAGTCGGAG
    CTTGGGCTTT CATTGGTCTC ACCGCTTCAA TCGTCACCAA AACGCTTTCT
    TTCTCCGCCG CTTTCTCAGC TTTCACAAGC GAGGTTATCT GGTTGATCGT
    TATCTCTTTC TTCTTCGCTC GTGGATTCGT CAAAACAGGT CTTGGTGATA
    GAATCGCTAC TTACTTTGTC AAATGGCTTG GGAAGAGTAC TTTAGGTCTA
    TCTTATGGTC TCACGCTTAG TGAGGCTTTA ATTGCTCCTG CGATGCCTAG
    TACTACTGCT AGAGCTGGTG GCATTTTCTT GCCCATCATC AAGTCTCTAT
    CGCTCTCGGC TGGAAGTAAA CCGAATGATT CTTCTTCGAG GAAACTAGGC
    TCTTACTTGA TTCAATCTCA ATTCCAGTGC GCCGGAAACT CTAGTGCGCT
    TTTCTTGACT GCTGCAGCTC AAAATTTGCT GTGTCTCAAG TTAGCAGAGG
    AGCTTGGAGT AGTGATCTCA AACCCGTGGG TTTCTTGGTT TAAGGCTGCT
    AGTCTACCTG CAATCATATC ACTTCTTTGT ACTCCACTTA TCCTCTATAA
    GCTTTATCCT CCAGAAACAA AGGACACACC TGAGGCTCCA GGTATTGCTG
    CAACGAAACT CAAGCAAATG GGCCCTGTCA CTAAAAACGA ATGGATCATG
    GTCGGTACAA TGCTTCTTGC TGTCACTCTT TGGATCTGCG GAGAGACTCT
    GGGAATACCA AGTGTTGTAG CTGCCATGAT CGGTCTCTCC ATACTTCTTG
    TGCTAGGTGT CCTTAATTGG GACGATTGCC TAAGCGAAAA ATCGGCATGG
    GACACATTAG CTTGGTTTGC TGTCTTGGTG GGAATGGCAG GACAGCTTAC
    AAACCTCGGT GTTGTAACGT GGATGTCTGA TTGTGTAGCT AAAGTTCTAC
    AATCTCTCTC CTTGAGTTGG CCTGCTGCGT TTGGACTTCT TCAAGCAGCC
    TACTTCTTCA TTCACTACCT TTTCGCAAGC CAAACCGGTC ATGTTGGAGC
    TCTCTTCTCA GCTTTCCTTG CTATGCATAT AGCAGCAGGT GTTCCAGGAA
    TTCTAGCTGC ACTTGCTTTA GCATACAACA CCAATCTTTT TGGTGCTTTG
    ACTCATTACA GTAGCGGTCA AGCCGCTGTC TACTATGGAG CGGGTTATGT
    TGATCTGCCT GATGTATTCA AGATTGGATT CGTGATGGCG ACGATTAATG
    CGATAATCTG GGGAGTAGTT GGGACTTTCT GGTGGAAATT TTTGGGTCTC
    TACTAAGAGC TCCTCAGAAG AAAGTTGTTC TTGAAGAAGC TTTGCAAAGT
    CCGGTACAAT TCTTTTGTTG ATCATTCGGT TTTGAGGCTT CATTTTTTTC
    TACTTGCAAT TAGAGAATCA GACAATTCTT TGTCAAATAG ATATACAGAA
    GATCTATCTC GATTTGTTCT CTTTATGAAA TATCGTGTTT CTTTTTCGGA
    GAAAGAGTAA GATACATGAT GAAAATCTGT TTTGGGGGCG TTTTTGTTAA
    AACGAAAATG TCTGGGTAAT AAAAAACAGA GAAAATAGTC ATAAAAAAGG
    AGTGAATCTT CAAATTACCT ATTAAAAAAA AAATAAAAAA AAAAAAAAAA

    Gene models with high sequence identity

    1. AT5G64290.1 [+] show detail - dicarboxylate transport 2.1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Sodium/sulphate symporter 2e-140
    HMMTigr Sodium/sulphate symporter 2.4e-136
    HMMPanther SODIUM/CARBOXYLATE COTRANSPORTER RELATED 6.5e-238
    HMMPanther CATION TRANSPORTER RELATED 6.5e-238

    See the detailed result >

    AT5G64290.1

    Model type
    Protein coding
    Short Description
    dicarboxylate transport 2.1
    Computational Description
    dicarboxylate transport 2.1 (DIT2.1); FUNCTIONS IN: oxoglutarate:malate antiporter activity; INVOLVED IN: malate transport, response to nematode; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sodium/sulphate symporter (InterPro:IPR001898); BEST Arabidopsis thaliana protein match is: dicarboxylate transporter 2.2 (TAIR:AT5G64280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR