F28919

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28919

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28919

Determination of introduced cDNA(s)

  • RAFL07-08-C08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-08-C08 - Resource: pda01457

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-08-C08 - full reading 
    ATTTGTCTTA TCTTTTCTTC TCCTTTCTCT CCACCATTTG TCTTATCTTT 
    TCCTCTCCTT ACTCTCCATC AATGGCTTCT CTTATCTCTT TTTCTTTGCT 
    CCCAAAACCA AAAGCCGTAA GAAGTTCAAT TTCAGCTCCT CAGACACAGA 
    CAATAAATAC TGAAAAGCTT GAAGATAAAT TCGGACGAAA AGGCATAAAA 
    TTCTCGGAAT CAAACAACAT TCCTATGGTA GAGCTTAAGG TCAGAAATGG 
    AAGTTCATTA AAACTGAGTC TATCAGATGC TCATGTACTT TCATATAAGC 
    CAAAGGTATA CTGGAAAGAC GAGGGATTCG AGGAAGTCCT TTACACAGTT 
    GATGGTGATG AGAGCAGAGG TGGGGTTGGT GTTGTTATCG TAAACGGGGA 
    AGAACCTAAA GGAGGGTCTT CAGTAATCTC AGGATGTGAT TGGAGTGTCA 
    AGGATACTGA TTCAGACGCC ATTGATGCTC TTCAGATCGA ACTTAGCTGT 
    ACGGCCGGGG TTCTCGACAT AACGTATATC GTCTCTCTCT ACCCAGTAAG 
    CATGGCTACA GCTCTGGTGG TGAAGAACAA TGGTCGCAAA CCAGTTACCC 
    TTAAACCGGG GATTATGAGT TACTTGAGGT TCAAGAAACG GAGTGGGGCA 
    GGAATTCAAG GACTAAAGGG ATGCTCTTAT TGTCCCAACC CGCCTTTGTC 
    ATCGCCTTTT GAGCTCTTGT CTCCTTCTGA GGCAATGAAG GCGGAATCTT 
    CGGGGTGGTT CGGGTCGGAA GAAGGGGAAA AGCCGGGGAT TTGGGCAGTA 
    GAAGATTCTG TTATTACACT TCTTGAGAAA AAGATGAGTA GAATATATGG 
    TGCTCCTCCG GCTGAGAGAT TAAAGGCAGT CTATAACACT CCACCTTCCA 
    AATTTGAAAC TATAGATCAG GGGAGAGGAT TGTTTTTCAG GATGATAAGG 
    ATTGGGTTCG AAGAGATGTA TGTGGGATCC CCAGGATCGA TGTGGGACAA 
    GTATGGGAAG CAACATTACT TCGTGTGCAC AGGTCCAACG TCAATGCTCG 
    TTCCTGTCGA TGTAGCCTCC GGAGAGACAT GGAGAGGAGC AATGGTAATC 
    GAGCATGATA ATTTGTAAAT TTCATTTACT ATAGTTCTGT CTTCTTCATT 
    TTTTCCCTCT CTATTTTTGT TGCCATTTTT TCTTCTATAT ATTCAAAACA 
    TGTTAATGAC TATACTAAAT CAATATACAA TAATGAACTT AGTAAATCAA 
    AGTTGATGTG AAAAAAAAAA AAAAAA

    Gene models with high sequence identity

    1. AT1G64770.1 [+] show detail - NDH-dependent cyclic electron flow 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G64770.1

    Model type
    Protein coding
    Short Description
    NDH-dependent cyclic electron flow 1
    Curator Summary
    encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP.
    Computational Description
    NDH-dependent cyclic electron flow 1 (NDF2); FUNCTIONS IN: carbohydrate binding, catalytic activity; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013); BEST Arabidopsis thaliana protein match is: NDH-dependent cyclic electron flow 5 (TAIR:AT1G55370.2); Has 82 Blast hits to 81 proteins in 22 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 5; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR