F28921

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28921

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28921

Determination of introduced cDNA(s)

RAFL05-18-A09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-18-A09 - Resource: pda02746

full reading [+] show sequence

CTCGGAGATT CAATCACTCA TGGCGAACGA AGACGACGAC GGTGAGAAAT 
CCAGAAGTCT GCACCAACAG ATTGCTAGAA AACCCAAAAC CCAGATCGTG 
ATTGGTGTGC CATCGTACCA GGAAGTTTTG GAAAGCTCAC AGACGAAGTC 
CACGCCTCCA TCTCTCTTCA AGCCTTCCCA GAGTTTCTCT CAGGCTTTCG 
CTTTCGTCAA GTCGTCCGAC GTCTACTCTC CTCCTCCTCC TTCCTCCGCA 
GCCGCCTCTT CTTCTCAGCC GTCGGGCGCT TCTCAGGTGC CCCACAGTTC 
AAGCCAAACG CATCAAACTG ATGGAGCCTC ATCTTCTTCT ACTCCTGTAG 
CCACTGGCTC TGTACCATCA AACACAACTC AAAATCGTAA CGCTATTCTC 
GTTAGCCATC GACAGAAAGG AAACCCGCTT CTTAAACATA TCAGGAATGT 
GAAATGGGTT TTCTCAGATA TCATTCCAGA TTACGTGCTT GGTCAAAACT 
CTTGCGCTTT GTATTTAAGC TTGCGGTATC ATCTCCTACA TCCGGATTAC 
CTCTATTTCC GCATTAGGGA ACTACAAAAG AATTTCAAGC TAAGTGTTGT 
TCTTTGCCAT GTCGACGTGG AAGATACGGT GAAACCGTTG CTTGAAGTCA 
CAAAAACCGC TCTACTTCAT GATTGCACTC TATTGTGTGC CTGGAGCATG 
ACAGAATGTG CCCGTTATTT GGAAACGATA AAAGTCTATG AAAACAAACC 
TGCAGATCTC ATCCAAGGCC AAATGGATAC AGATTACCTT TCACGGCTAA 
ACCATTCTCT TACAAGCATT CGACATGTAA ACAAGAGCGA TGTAGTTACA 
CTTGGTTCTA CATTCGGGTC TCTTGCTCAT ATAATCGATG CATCCATGGA 
AGATTTAGCA CGTTGTCCCG GGATTGGCGA ACGTAAGGTG AAGCGGTTGT 
ATGATACATT CCACGAGCCT TTCAAGCGTG CAACTTCGAG CTACCCGTCT 
GTTGTAGAAC CACCAATCCC GGAAGCTCCA GTTGAGAAGG ATGTGAACTC 
AGAGGAACCT GTTGAAGAAG ACGAGGATTT TGTGGAGGAC TCGAGAAAAC 
GCAAGAAGAA GGAGCCCGAG CCCGAGAAAA CTGTGAAGAC CGCACTCTCT 
GCTGTTTTTG CTCGTTACTC TGATAGACTT AGCAAGAAAA AGGAGAAACA 
GAAGGAGAAA GATACAACAA CGGCGTCAGA TGCTGAAACC CACCAAAATT 
AACACGGTTT TGTTCCTTGG GTAAGGCCAT GGTGACCACA TTCCTAGGAT 
TGTAACTTAA TGATAATAAA AAAGCTTTAC TGTGTCTAAT TTGTGTGATC 
TCTACCATAG AATTGGTTGG TTATTGAAGC CTGCGTGTAT AAATTTCAAA 
GGGTTGTTAC TACTTTGTTA TCTTTTTTCT TGGTCTGGGC CATGTGCAAT 
AGTATTATAA ACAAACAAAA C

Gene models with high sequence identity

AT3G05210.1 [+] show detail - nucleotide repair protein, putative
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	RuvA domain 2-like	5e-16
HMMPfam	DNA repair protein rad10	1.4e-29
BlastProDom	DNA repair protein rad10	1e-69
Gene3D	no description	8.4e-05
HMMPanther	EXCISION REPAIR CROSS-COMPLEMENTING 1 ERCC1	3.6e-113
HMMTigr	DNA repair protein rad10	5.7e-53

See the detailed result >

AT3G05210.1

Model type: Protein coding
Short Description: nucleotide repair protein, putative
Curator Summary: encodes a homolog of human ERCC1 protein (yeast RAD10), which is a DNA repair endonuclease. Mutants are sensitive to UV-B and gamma radiation (G2 cell cycle phase arrest) and are defective in dark-repair of pyrimidine pyrimidone dimers. This protein incises the 5' end of damaged DNA, similar to ERCC1/RAD10.
Computational Description: ERCC1; FUNCTIONS IN: 5'-flap endonuclease activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), DNA repair protein rad10 (InterPro:IPR004579), RuvA domain 2-like (InterPro:IPR010994); Has 658 Blast hits to 452 proteins in 188 species: Archae - 0; Bacteria - 4; Metazoa - 166; Fungi - 153; Plants - 44; Viruses - 0; Other Eukaryotes - 291 (source: NCBI BLink).
Link: InterPro Scan - TAIR