F28931

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) abnormal (PATO:0000460) (Rosette leaf::Others) abnormal (PATO:0000460) (Rosette leaf::Others)
	stem (PO:0009047)	present in fewer numbers in organism (PATO:0001997) (Stem::Number::few)
T2
T2	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) epinastic (PATO:0000945) (Rosette leaf::Shape::epinastic) abnormal (PATO:0000460) (Rosette leaf::Others) increased width (PATO:0000600) (Rosette leaf::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28931

Determination of introduced cDNA(s)

RAFL09-49-K10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-49-K10 - Resource: pda08429

full reading [+] show sequence

ATTCTGTTTG TGAGTGTGTT TTTTTGGTCT ATATGAGTAA TGATGTTTCG 
TGGTATTCTG AAATCTGCAA AGGATGAGAA GAAGAAGATG GAGTCTCAAG 
GCAATGGAGC TGTTGCTAAT TCAGGAAAAT CTCTGGTTAA TCGCCGACGA 
GCTAACAAAG AAAAGAAAAT GGATTTGCTA CAAGATGTTG ATAAGCTTAA 
GAGGAAGCTG AGACAGGAGG AGAATGTTCA TAGAGCATTG GAGAGAGCTT 
TTACTAGACC TTTAGGAGCT TTACCTCGTC TTCCGTCTTA CCTCCCTCGA 
CATACATTGG AGCTTCTTGC TGAAGTAGCT GTTCTTGAAG AGGAAGTGGT 
TCGGTTAGAG GAGCAAGTTG TAAACTTTAG ACAAGGTTTA TACCAAGAAG 
CTGTTTACAT ATCTTCAAAG AGGAATCTGG AGAGTCCTAA TAACAACAGT 
TTGAATGAGA ATTCGCCCGT TAGAAGCACT AAACACCAGA GATCGAAATC 
AATGTCGCAA CACGAGTTCA ATTCTATGAT CACTCCCACT AAAAAGCATC 
AACAGTCTCT TAGCAGAAGC ATCTCAAGTA GGAAACTCTT CTCCTCTGAT 
CAAACAGTTA ATGACCGAAG TGGTCAGAGA GTGGTAAGTG GCAAACAAGC 
GTCGCCTAAA TCAAATCTAA GCAGTGTTAC TAATACTAAG CCAGTAGATG 
TGAGAGGGAA AGAGAATCAG ACCTCTAGTA ATGCTTCAAA AGACAAGAAA 
AATAAAGAAT CACCTGAGAA GAAGCTTGGC AGATTCTTGA CATCTGTGAA 
GAAGAAGAAA CCTTTGATTA AGCCGGAGGC TGCAGCGGAT AAACACTCAG 
AATCAACCAA ATTGCAGCTA GATGATAGAT TAGCAGATCA GGACAAAGCT 
CAAGAGAGTG TGTCAGGATC ATCTTCGGAA GACAAGACAC TGCAAAGTGG 
AAATGTAGCA AACAGAGTTT CAGAGGATTT ACTGAAATGT CTTGTGACTA 
TTATCTTGAG GATTAGCTCG TCCAAGGACA TTGTGTTGGA TCCATATAAT 
AACTGCTCAG AGTGGAGAAC AAGAGAACTT GGTGCATACA AGCATTTTTC 
GTCGGTCGAT ACATCTTCAG TTGATCTTGG ACGAAGAATC AATGCTTCAT 
TTCTGATCCA TCGTCTCAAG TTCCTGCTTA ATAAGCTTTC TGTTGTCAAT 
CTAGACGGTC TTAGCCACCA GCAGAAGCTT GCATTCTGGA TAAATACTTA 
TAATTCCTGC GTTATGAATG CATTCTTGGA GCACGGGATC CCGGCGACTC 
CTGAAATGGT TGTAGCGCTG ATGCAGAAGG CAACAATAAT TGTGGGAGGA 
CACTCGCTAA ATGCAATCAC AATCGAACAT TTCATCTTGA GACTTCCATA 
CCACTTGAAA TTCACTTGTC CCAAAACTGC AACACATGAA GAAATGAGAG 
CTCATAGCAC ATTTGGATTG GAATGGTCAG AGCCCTTGGT CACATTCGCT 
CTCGCCTGTG GAAGCTGGTC CTCTCCTGCT GTAAGGGTCT ACACAGCAGC 
TAATGTAGAG GAAGAGCTAG AAGCTGCAAA GAGAGATTAT CTGCAAGCAT 
CAGTTGGGAT ATCAAAGAAC AACAAACTAA TGCTTCCAAA GGTATTAGAT 
TGGTACTTAC TCGACTTTGC CAAGGATTTG GAATCGTTAC TGGATTGGGT 
TTGCCTTCAG TTACCTGATA AACTAAGAGA AGAAGCAACT AAGTGTATGG 
AGAGAAAGAA CAAAGAATCA CTAATGGAAT TGGTTCAAGT AGTACCATAT 
GACTTCAGTT TCAGATTGCT TTTGCATCAA TGAATAAAAA AATGTTAAAC 
ACTGTATAGA TTTGGGTTGG GGAGAGAGTA AAGTAGAGCG CATGAGTTCA 
ATTTGTTATT GTTTTTTTTG GTTGGCTGAG AGTATATATA GATTATATGG 
TTGTGTTCTT TTACTATAAA GTGATGTAAA ATTCATTCAA TTGATTTTTA 
TTTGTAATGC TATATATGTA TATGTCTACA CCATTTTTTT TTTGTCTGAT 
TTGTTTTTTC TTGTCTCCT

Gene models with high sequence identity

AT4G37080.1 [+] show detail - Protein of unknown function, DUF547
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	UNCHARACTERIZED	1.3e-101
HMMPfam	Protein of unknown function DUF547	8.2e-39
Coil	coiled-coil	0
Coil	coiled-coil	0

See the detailed result >

AT4G37080.1

Model type: Protein coding
Short Description: Protein of unknown function, DUF547
Computational Description: Protein of unknown function, DUF547; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT5G42690.2); Has 1854 Blast hits to 1696 proteins in 329 species: Archae - 6; Bacteria - 397; Metazoa - 313; Fungi - 62; Plants - 588; Viruses - 2; Other Eukaryotes - 486 (source: NCBI BLink).
Link: InterPro Scan - TAIR