F28946

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28946

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Seed::light red

Original: F28946

Determination of introduced cDNA(s)

RAFL06-88-P09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-88-P09 - Resource: pda17271

full reading [+] show sequence

GATAGACAAC TCAAGTTTCT TGCAATTACC TACTTACAAC AAAGCAACTC 
GACTCGAACA AACACATCCA TGGCTCCTTC TGCGCAACCT CTTCCTGTGA 
GTGTTTCGGA TGAAAAATAT GCGAATGTCA AGTGGGAAGA GTTGGCATTC 
AAGTTTGTTC GTACGGATTA TATGTATGTT GCGAAGTGCA ATCATGGAGA 
GAGTTTTCAA GAGGGGAAGA TTCTTCCTTT TGCTGATTTG CAACTTAACC 
CTTGCGCTGC TGTTCTTCAG TATGGCCAGG GTTTATATGA AGGACTGAAA 
GCTTACAGGA CAGAAGATGG TCGGATTCTG CTATTCCGAC CAGACCAAAA 
CGGTCTCCGC CTTCAAGCCG GAGCTGACAG ACTCTATATG CCTTATCCTT 
CGGTCGATCA ATTCGTCTCC GCCATCAAAC AAGTTGCTCT TGCCAACAAG 
AAATGGATTC CTCCTCCGGG GAAAGGAACA TTGTATATTA GGCCTATCTT 
GTTTGGGAGT GGTCCGATTC TTGGTTCATT TCCCATTCCT GAGACCACCT 
TCACAGCTTT TGCCTGTCCT GTTGGACGTT ATCATAAGGA TAACTCTGGT 
TTGAATCTGA AAATCGAAGA TCAGTTTCGT CGAGCTTTTC CTAGTGGAAC 
TGGTGGTGTG AAGAGCATCA CAAACTATTG TCCTGTTTGG ATACCATTGG 
CAGAGGCGAA AAAACAAGGT TTCTCTGATA TTTTGTTTTT GGATGCTGCA 
ACTGGCAAAA ACATTGAAGA ACTTTTCGCA GCTAATGTTT TTATGCTCAA 
GGGCAATGTT GTATCGACAC CAACAATTGC AGGAACTATT TTGCCCGGAG 
TCACTCGAAA CTGCGTAATG GAATTGTGTC GTGATTTCGG CTACCAGGTC 
GAGGAACGTA CGATTCCTCT AGTGGACTTT CTCGATGCGG ACGAAGCTTT 
CTGTACTGGC ACTGCTTCCA TTGTGACTAG TATTGCATCC GTAACCTTTA 
AAGACAAAAA GACCGGATTC AAAACAGGGG AAGAAACATT GGCTGCGAAG 
CTATACGAGA CGTTAAGTGA TATCCAGACG GGTCGGGTCG AGGATACCAA 
GGGATGGACG GTGGAGATTG ACCGCCAGGG CTGAAAGTTG AAACTGTAAC 
TTGATGCTAA ATATGTGTGT GTGTGTATAC AAAACTTATG TAAGAAACAT 
CTGAAGATGT CTCTGATCTT TGTGATTGTG ATGATCATGC ATGTCCTATC 
GTTGCGATGT ATTTTATAAA TGTTCGTCTG TAAGTTATTT AATAACTATG 
GCTTTTTGCT TTATCTTTTT AATTATTTTT AAAGAGTAAA GAAAAAA

Gene models with high sequence identity

AT3G19710.1 [+] show detail - branched-chain aminotransferase4
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMTigr	Branched-chain amino acid aminotransferase II	3.3e-95
HMMPfam	Aminotransferase, class IV	9.5e-27
Gene3D	no description	8.1e-50
Gene3D	no description	8.9e-46
superfamily	Aminotransferase, class IV	9.5e-102
HMMPIR	Branched-chain amino acid aminotransferase II	5.2e-124
HMMPanther	Branched-chain amino acid aminotransferase II	1.9e-156
HMMPanther	Aminotransferase, class IV	1.9e-156

See the detailed result >

AT3G19710.1

Model type: Protein coding
Short Description: branched-chain aminotransferase4
Curator Summary: Belongs to the branched-chain amino acid aminotransferase gene family. Encodes a methionine-oxo-acid transaminase. Involved in the methionine chain elongation pathway that leads to the ultimate biosynthesis of methionine-derived glucosinolates.
Computational Description: branched-chain aminotransferase4 (BCAT4); CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (TAIR:AT1G50110.1); Has 11097 Blast hits to 11097 proteins in 2502 species: Archae - 154; Bacteria - 6834; Metazoa - 263; Fungi - 399; Plants - 250; Viruses - 0; Other Eukaryotes - 3197 (source: NCBI BLink).
Link: InterPro Scan - TAIR