F28947

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28947

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28947

Determination of introduced cDNA(s)

  • RAFL09-67-G06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-67-G06 - Resource: pda08666

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-67-G06 - full reading 
    AAAAAAGAAA CAATCTTTAG ACAAAAGAAG AGAAATTTAG TCATGGGTTA 
    GTCTGCAAAA TTCAATTACG TCTTCTTCTT CTTCTTCTTC TTCATCTTTG 
    ATTTGTTGGC GTGTTTAGGG TTTGGGATTT GGAGGAGAGG CAAAATGTTG 
    AATTAAATAA ATCGAACGAC TCTGGATTCC TCGGCGGTTA ACGACCGCCG 
    TCGCCGCCGC CGTCATAATC CAACCACCAC CACCATCAAC GACCTTGAAT 
    TTCCACAATA TGCTTCATCA ATGGCACCAG ATAACGACCA TTTCTTAGAT 
    TCTCCGTCGC CGCCTCTTCT AGAGATGAGA CACCACCAAT CAGCGACGGA 
    GAACGGTGGT GGTTGCGGCG AGATTGTGGA GGTACAAGGA GGTCACATTG 
    TTCGGTCAAC AGGAAGAAAA GACAGACATA GTAAAGTATG TACAGCGAAA 
    GGACCACGTG ACCGGCGCGT GAGACTCTCA GCTCCGACGG CGATTCAATT 
    CTACGATGTT CAAGATAGAC TTGGTTTTGA TCGACCAAGT AAAGCTGTTG 
    ATTGGCTTAT TACTAAAGCT AAATCCGCCA TTGATGATCT TGCTCAGCTT 
    CCTCCTTGGA ACCCCGCCGA TACTCTTCGT CAACACGCCG CCGCTGCTGC 
    TAACGCTAAA CCCAGAAAAA CCAAAACTTT AATTTCTCCG CCACCGCCAC 
    AACCGGAAGA AACAGAGCAT CATCGAATCG GAGAAGAAGA AGATAACGAA 
    TCGAGTTTTC TTCCGGCGTC AATGGATTCT GATTCGATAG CTGACACTAT 
    AAAGTCGTTT TTTCCGGTAG CTTCAACGCA ACAGAGCTAT CATCATCAGC 
    CACCGTCACG AGGCAATACA CAGAACCAAG ATCTTCTTCG TCTCTCGCTT 
    CAATCTTTCC AAAATGGTCC ACCTTTTCCT AATCAAACAG AACCTGCTCT 
    GTTCTCCGGC CAGAGCAATA ATCAGTTAGC GTTTGACTCA TCGACGGCAA 
    GCTGGGAACA GAGTCATCAG TCACCGGAAT TTGGAAAGAT ACAGAGACTA 
    GTGTCATGGA ACAACGTCGG AGCAGCTGAA TCCGCCGGAA GTACCGGAGG 
    ATTTGTGTTT GCTTCTCCGT CGTCGTTGCA TCCAGTTTAT AGCCAAAGTC 
    AGCTTTTATC ACAGAGGGGT CCCCTTCAGT CCATTAACAC ACCTATGATT 
    CGTGCTTGGT TTGATCCTCA CCATCATCAT CATCATCATC AGCAGTCCAT 
    GACCACTGAC GATCTCCACC ATCATCATCC CTACCATATC CCTCCCGGGA 
    TTCACCAATC TGCTATTCCA GGCATTGCAT TTGCTTCAAG TGGTGAATTC 
    TCCGGTTTTC GTATACCAGC ACGGTTTCAA GGCGAACAAG AGGAGCACGG 
    CGGCGACAAC AAGCCGTCCT CTGCTTCATC CGATTCTCGC CATTAAACAA 
    GTTCCAAAAA CACATAAGAT TGTGCAACAC AACAGGTTTC TTTTCATATT 
    CCAGGGCGCT TCGAATGCGT GGAATAGTGA AGGCGGTTTT CGTTGTTGTG 
    TGTTTCGAAT ATCCAAATGG CCTATAAATC TGATCAACAG TTTCAGGTTC 
    TTCTTAAGTC TTTAAAAGCC TAGGCCTTGG TTAATTTGAA TTCATCTTGT 
    ATCAATTAGA GAACGTTCTG TAAGTTCAAT TCTGTTTTAC AATGTTTAGC 
    TCTAGCTACA TGAGCTCACA TCTTGTTTGT TGTAACTTGT TCTACAATTA 
    CTTGTCCTTT ATTTATGTTC TTGTGTTGGA AACCTTTAAC CCCACTTGAA 
    GCTAAAGTCT TTTGTTTGCC C

    Gene models with high sequence identity

    1. AT1G53230.1 [+] show detail - TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Transcription factor TCP subgroup 34.581
    HMMPfam Transcription factor, TCP 1.7e-32

    See the detailed result >

    AT1G53230.1

    Model type
    Protein coding
    Short Description
    TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3
    Curator Summary
    Encodes a member of a recently identified plant transcription factor family that includes Teosinte branched 1, Cycloidea 1, and proliferating cell nuclear antigen (PCNA) factors, PCF1 and 2. Regulated by miR319. Involved in heterchronic regulation of leaf differentiation.
    Computational Description
    "TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3" (TCP3); CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor 4 (TAIR:AT3G15030.3); Has 1510 Blast hits to 1508 proteins in 333 species: Archae - 0; Bacteria - 12; Metazoa - 43; Fungi - 12; Plants - 1439; Viruses - 2; Other Eukaryotes - 2 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR