F28947

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28947

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28947

Determination of introduced cDNA(s)

  • RAFL09-67-G06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-67-G06 - Resource: pda08666

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-67-G06 - full reading
    AAAAAAGAAA CAATCTTTAG ACAAAAGAAG AGAAATTTAG TCATGGGTTA 
    GTCTGCAAAA TTCAATTACG TCTTCTTCTT CTTCTTCTTC TTCATCTTTG
    ATTTGTTGGC GTGTTTAGGG TTTGGGATTT GGAGGAGAGG CAAAATGTTG
    AATTAAATAA ATCGAACGAC TCTGGATTCC TCGGCGGTTA ACGACCGCCG
    TCGCCGCCGC CGTCATAATC CAACCACCAC CACCATCAAC GACCTTGAAT
    TTCCACAATA TGCTTCATCA ATGGCACCAG ATAACGACCA TTTCTTAGAT
    TCTCCGTCGC CGCCTCTTCT AGAGATGAGA CACCACCAAT CAGCGACGGA
    GAACGGTGGT GGTTGCGGCG AGATTGTGGA GGTACAAGGA GGTCACATTG
    TTCGGTCAAC AGGAAGAAAA GACAGACATA GTAAAGTATG TACAGCGAAA
    GGACCACGTG ACCGGCGCGT GAGACTCTCA GCTCCGACGG CGATTCAATT
    CTACGATGTT CAAGATAGAC TTGGTTTTGA TCGACCAAGT AAAGCTGTTG
    ATTGGCTTAT TACTAAAGCT AAATCCGCCA TTGATGATCT TGCTCAGCTT
    CCTCCTTGGA ACCCCGCCGA TACTCTTCGT CAACACGCCG CCGCTGCTGC
    TAACGCTAAA CCCAGAAAAA CCAAAACTTT AATTTCTCCG CCACCGCCAC
    AACCGGAAGA AACAGAGCAT CATCGAATCG GAGAAGAAGA AGATAACGAA
    TCGAGTTTTC TTCCGGCGTC AATGGATTCT GATTCGATAG CTGACACTAT
    AAAGTCGTTT TTTCCGGTAG CTTCAACGCA ACAGAGCTAT CATCATCAGC
    CACCGTCACG AGGCAATACA CAGAACCAAG ATCTTCTTCG TCTCTCGCTT
    CAATCTTTCC AAAATGGTCC ACCTTTTCCT AATCAAACAG AACCTGCTCT
    GTTCTCCGGC CAGAGCAATA ATCAGTTAGC GTTTGACTCA TCGACGGCAA
    GCTGGGAACA GAGTCATCAG TCACCGGAAT TTGGAAAGAT ACAGAGACTA
    GTGTCATGGA ACAACGTCGG AGCAGCTGAA TCCGCCGGAA GTACCGGAGG
    ATTTGTGTTT GCTTCTCCGT CGTCGTTGCA TCCAGTTTAT AGCCAAAGTC
    AGCTTTTATC ACAGAGGGGT CCCCTTCAGT CCATTAACAC ACCTATGATT
    CGTGCTTGGT TTGATCCTCA CCATCATCAT CATCATCATC AGCAGTCCAT
    GACCACTGAC GATCTCCACC ATCATCATCC CTACCATATC CCTCCCGGGA
    TTCACCAATC TGCTATTCCA GGCATTGCAT TTGCTTCAAG TGGTGAATTC
    TCCGGTTTTC GTATACCAGC ACGGTTTCAA GGCGAACAAG AGGAGCACGG
    CGGCGACAAC AAGCCGTCCT CTGCTTCATC CGATTCTCGC CATTAAACAA
    GTTCCAAAAA CACATAAGAT TGTGCAACAC AACAGGTTTC TTTTCATATT
    CCAGGGCGCT TCGAATGCGT GGAATAGTGA AGGCGGTTTT CGTTGTTGTG
    TGTTTCGAAT ATCCAAATGG CCTATAAATC TGATCAACAG TTTCAGGTTC
    TTCTTAAGTC TTTAAAAGCC TAGGCCTTGG TTAATTTGAA TTCATCTTGT
    ATCAATTAGA GAACGTTCTG TAAGTTCAAT TCTGTTTTAC AATGTTTAGC
    TCTAGCTACA TGAGCTCACA TCTTGTTTGT TGTAACTTGT TCTACAATTA
    CTTGTCCTTT ATTTATGTTC TTGTGTTGGA AACCTTTAAC CCCACTTGAA
    GCTAAAGTCT TTTGTTTGCC C

    Gene models with high sequence identity

    1. AT1G53230.1 [+] show detail - TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Transcription factor TCP subgroup 34.581
    HMMPfam Transcription factor, TCP 1.7e-32

    See the detailed result >

    AT1G53230.1

    Model type
    Protein coding
    Short Description
    TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3
    Curator Summary
    Encodes a member of a recently identified plant transcription factor family that includes Teosinte branched 1, Cycloidea 1, and proliferating cell nuclear antigen (PCNA) factors, PCF1 and 2. Regulated by miR319. Involved in heterchronic regulation of leaf differentiation.
    Computational Description
    "TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3" (TCP3); CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor 4 (TAIR:AT3G15030.3); Has 1510 Blast hits to 1508 proteins in 333 species: Archae - 0; Bacteria - 12; Metazoa - 43; Fungi - 12; Plants - 1439; Viruses - 2; Other Eukaryotes - 2 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR