F28948

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28948

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28948

Determination of introduced cDNA(s)

  • RAFL02-07-J21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL02-07-J21 - Resource: pda02246

    full reading [+] show sequence

    Nucleotide sequence: RAFL02-07-J21 - full reading 
    ACAAATCTCA CATCCTCACT CCTCAGCTCC TCAAATCAGA ATGAATCAAT 
    CCGCGCAAAA TTACTTTTCC GTGCAAAAAC CTTCAGAGAC TTCATCAGGG 
    CCGTACACAA GTCCGCCACC AATTGGTTAT CCGACTAGAG ATGCGGTGGT 
    GGGTGATCCT CCGGCAGCAG CAGTGGAGAC AAACTCCAAG GGCGTCAACC 
    CCGAAGCCAT AATGAGTTGT TTTAGTACTT GTATGGAGTG TATCTTCTGC 
    TGCGGCGTAT GCTCCAGCCT CTGTACATCA GAGTAAATCA GCATGATGAG 
    ACAGAAGTCG TTGCCCAAAC CTGAAAAACA ACACGTGATA GAAAATCTAT 
    ATATATATAT ATATATATAT ATGTTATAGT AGTCGTTTCT ATGGATTTCC 
    ACGCATTTTA AAGTTTATTT GTTTCACTGT TTAAAATGAA TCATTTGCTT 
    CGTGTATTTT GTTTCTATAT AAATAAAAGA AATTAAAAAC C

    Gene models with high sequence identity

    1. AT3G22231.1 [+] show detail - pathogen and circadian controlled 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT3G22231.1

    Model type
    Protein coding
    Short Description
    pathogen and circadian controlled 1
    Curator Summary
    Encodes a member of a novel 6 member Arabidopsis gene family. Expression of PCC1 is regulated by the circadian clock and is upregulated in response to both virulent and avirulent strains of Pseudomonas syringae pv. tomato.
    Computational Description
    PATHOGEN AND CIRCADIAN CONTROLLED 1 (PCC1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to fungus, response to bacterium; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22235.2); Has 49 Blast hits to 49 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR