F29016

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29016

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29016

Determination of introduced cDNA(s)

  • RAFL09-46-K01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-46-K01 - Resource: pda06288

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-46-K01 - full reading 
    AGTTCAACTA ATAACGCAAA AATCAGTTTC TCTTTGAGTA AGTGTTTATT 
    ACAATTAAAC TAACTCAGGC AAGTCTATGA TCATGGCTTC TTCTGCTGCT 
    GCATCGATCT CTATGATAAC TCTAAGGAAC CTCTCTCGCA ATCATCAATC 
    TCACCAAAGC ACTTTTCTCG GTTTCTCTAG ATCCTTCCAT AACCAAAGGA 
    TCTCATCTAA CAGTCCAGGT CTCTCCACAC GAGCAAGATC CACCACTTCC 
    TCCACTGGAG GTTTCTTCAG AACCATTTGC AGCAGCAGTA GCAATGACTA 
    CTCCAGACCA ACTAAGATCC AAGAGCTTAA CGTCTACGAG TTCAACGAAG 
    GTGATCGAAA CAGTCCAGCG GTTTTAAAAC TAGGGAAAAA ACCAGATCAG 
    CTTTGTCTCG GAGATCTTGT CCCCTTCACA AACAAACTCT ACACAGGAGA 
    TCTCACAAAA CGCATAGGAA TCACCGCAGG TCTCTGCGTT TTGATCCAAC 
    ATGTTCCAGA GAAGAAAGGT GATCGCTTTG AAGCTTCTTA CAGTTTCTAC 
    TTCGGAGATT ATGGTCACAT ATCAGTTCAA GGACCTTATC TCACTTACGA 
    GGACACGTTT CTTGCTATCA CCGGTGGCTC CGGTGTGTTT GAAGGAGCTT 
    ATGGACAGGT CAAGCTTCGT CAGCTTGTGT ATCCTACGAA GCTGTTTTAC 
    ACTTTCTACT TGAAAGGTGT TGCTGCTGAT TTACCTGTGG AGCTTACCGG 
    AAAACATGTT GAGCCGTCGA AGGAAGTGAA ACCGGCGGCT GAAGCTCAGG 
    CGACTCAGCC CGGCGCTACG ATCGCTAACT TTACTAATTG AAATCTAAAT 
    CTTTGTGGGT GTCTTTGTCA TGGATCTTAT TGGGCTGTTG TTCATTGTGT 
    TTACATTTTA ATAATGGGCC TAAATAATGA GCCTTTGTAT TGGGCCGTTC 
    TCGTAAGCGT AATGTGTCCC GTCCCTATAA GCTGGATTTA AGCGCGTGAA 
    CTCCACCTTC CGATATTTTT TTTTGATAGA TTATATCAAA TCCATGGATA 
    CTTTCTATAT TTGGAAAGTT TGGCTTAGTA GGCTCGTGGC CATGTTTGAG 
    CT

    Gene models with high sequence identity

    1. AT1G13280.1 [+] show detail - allene oxide cyclase 4
      E-value: 0; Score: 99.91

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Allene oxide cyclase 4.5e-93
    BlastProDom Allene oxide cyclase 6e-104

    See the detailed result >

    AT1G13280.1

    Model type
    Protein coding
    Short Description
    allene oxide cyclase 4
    Curator Summary
    Encodes allene oxide cyclase. One of four genes in Arabidopsis that encode this enzyme, which catalyzes an essential step in jasmonic acid biosynthesis. Gene expression is reduced during senescence, a process that involves jasmonic acid signalling pathway.
    Computational Description
    allene oxide cyclase 4 (AOC4); FUNCTIONS IN: allene-oxide cyclase activity; INVOLVED IN: jasmonic acid biosynthetic process; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Allene oxide cyclase (InterPro:IPR009410); BEST Arabidopsis thaliana protein match is: allene oxide cyclase 3 (TAIR:AT3G25780.1); Has 204 Blast hits to 204 proteins in 33 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR