F29023

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29023

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29023

Determination of introduced cDNA(s)

  • RAFL08-12-F04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-12-F04 - Resource: pda04717

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-12-F04 - full reading 
    AATCCACTTT TATGTGATCG AGAAAGAGAT TCTAAGCCCA GAAAACACCA 
    AAACCTTCCA TTTTCATTGG TTCCCATTTT TTTTTCTTTG TAGCTCGAAT 
    TCTCTGCTGC CACTACTCGT AAGTGAAATT GGAGTTTTTA ATAGATCTTT 
    GGTTGCTTCT ATAGTCTCAG AATGGCAGCT TATGTTTCTC CCTGTTTAAC 
    TCCTCCGGAT TCTCGGGTAC TCACTGTTCT TAGAAAGAGT GTGTTACCTG 
    ATCATCATCT AGGCACGAGG GTTGGTTGCT TAAGAATGAG TGAAGGTACT 
    ACTAAAAGAT ATCGTGTTGT TGCTTCTCAT AAGTACGAGT CTTCGTCAAT 
    CAGAAACTCT TTGAATTCTC ATAGTACAAG CCATTTCCAA AGCCAAGACT 
    CTTTCTTGAA TCTCCACCCT GAGATATCCA TGCTCAACCC AAGAAAAGAA 
    ACTTCCAGTG TTCCCATTAC TGAGGATTTG GATGAGTTAT CTACTCCAAA 
    CACTTACAAT GAGGCTAGGA TTAAAGTTAT CGGCGTTGGA GGTGGTGGTT 
    CAAACGCTGT GAATCGTATG ATTGAGAGTG AGATGATTGG TGTGGAGTTT 
    TGGATTGTGA ATACCGATAT CCAAGCAATG AGAATATCTC CGGTTTTTCC 
    AGACAATAGG TTACAAATTG GTAAGGAGTT GACTAGGGGT TTAGGTGCTG 
    GAGGTAATCC AGAGATTGGG ATGAATGCTG CTACAGAAAG CAAAGAAGCT 
    ATTCAAGAAG CACTTTATGG TTCAGATATG GTCTTTGTCA CAGCTGGAAT 
    GGGTGGTGGA ACTGGCACAG GTGGTGCTCC TATAATTGCA GGGGTTGCAA 
    AAGCGATGGG TATATTAACG GTTGGTATTG TGACAACGCC TTTCTCATTT 
    GAGGGACGGA GAAGAGCACT CCAGGCTCAG GAAGGGATTG CAGCCCTCAG 
    AGATAATGTT GACACCCTCA TTGTTAATCC AAACGACAAG TTACTAGCAG 
    CAGTCTCTCA GTCTACTCCA GTTACAGAAG CATTTAATCT GGCAGATGAT 
    ATACTTCGTC AAGGTGTCCG TGGAATATCT GATATTATTA CGATTCCTGG 
    ATTGGTCAAT GTGGATTTTG CTGATGTGAG GGCGATAATG GCAAATGCAG 
    GTTCTTCATT GATGGGAATA GGAACTGCAA CAGGAAAGAC CCGAGCAAGA 
    GATGCTGCAT TAAACGCAAT CCAATCCCCT TTATTAGATA TTGGCATTGA 
    GAGAGCCACT GGAATAGTTT GGAACATAAC CGGTGGAAGT GACTTAACAC 
    TGTTCGAGGT AAATGCTGCT GCAGAAGTGA TTTACGACCT CGTTGATCCA 
    ACAGCGAATC TTATATTTGG TGCTGTGGTA GATCCATCTT ATAGTGGTCA 
    AATAAGTATT ACCCTGATAG CAACTGGCTT CAAACGCCAA GAAGAAGGAG 
    AAGGGAGGCC ACTTCAGGCG ACACAAGCGG ATGCATCAAT GGGAGCCACA 
    AGACGTCCTT CATCATCATT CACTGAAGGC AGCTCCATAG AGATCCCAGA 
    GTTCTTAAAG AAGAAAGGGC GCTCTCGCTA TCCTCGCCTC TAGACCCACT 
    TTGATCACTC TACATGATAT TGTTGAATGT AAGGAGAAAG AATGTTTGGT 
    GCGGCTATGT AAATTGCCTC TATGGTGATA TTCTATAATA GGTTGTTAGA 
    AATTATTTTA CTATATTACA AAAATAATGT TACTTGACAG ATGATAAATC 
    TTAGTCTCTG TCACTCTGTT TCCAAAAAAA AAAAAAAAAA AAAAGAAAAA 
    AAAAAAAAAA A

    Gene models with high sequence identity

    1. AT3G52750.1 [+] show detail - Tubulin/FtsZ family protein
      E-value: 0; Score: 99.89

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Cell division protein FtsZ, N-terminal 3e-50
    FPrintScan Cell division protein FtsZ, N-terminal 3e-50
    FPrintScan Cell division protein FtsZ, N-terminal 3e-50
    FPrintScan Cell division protein FtsZ, N-terminal 3e-50
    HMMSmart no description 2.7e-101
    HMMSmart Tubulin/FtsZ, 2-layer sandwich domain 1.2e-46
    HMMTigr Cell division protein FtsZ, N-terminal 4.4e-156
    superfamily Tubulin/FtsZ, N-terminal 1.7e-65
    superfamily Tubulin/FtsZ, C-terminal 5.2e-38
    Gene3D Tubulin/FtsZ, GTPase domain 5.9e-81
    Gene3D Tubulin/FtsZ, 2-layer sandwich domain 1.8e-30
    PatternScan Cell division protein FtsZ, conserved site 0
    HMMPfam Tubulin/FtsZ, GTPase domain 4.1e-33
    HMMPfam FtsZ_C 4.9e-32

    See the detailed result >

    AT3G52750.1

    Model type
    Protein coding
    Short Description
    Tubulin/FtsZ family protein
    Curator Summary
    Nuclear gene that encodes a plastidial division protein (FtsZ2-2).
    Computational Description
    FTSZ2-2; FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity; INVOLVED IN: protein polymerization; LOCATED IN: chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cell division protein FtsZ, N-terminal (InterPro:IPR000158), Cell division protein FtsZ, conserved site (InterPro:IPR020805), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: Tubulin/FtsZ family protein (TAIR:AT2G36250.2); Has 10464 Blast hits to 10464 proteins in 3156 species: Archae - 455; Bacteria - 6195; Metazoa - 8; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 3653 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR