F29033

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29033

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29033

Determination of introduced cDNA(s)

  • RAFL16-43-C08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL16-43-C08 - Resource: pda19756

    full reading [+] show sequence

    Nucleotide sequence: RAFL16-43-C08 - full reading
    ACTTTTTCCT TCAATCTCTC TTCTCGCTGA CGACTTGGAA ATAAAGTGAG 
    GGAAAATATT CCTCCAACTT CACTTTCCTG AGAATCTGCA AATAAAGCAA
    TTCAACTTCC TTTTCTTTCT TTCTAAATGA AATTTCGTTC TTTGTCTCAG
    TCTCTCTCTC TTTCTTCGGT CGAGTCCGAT CAAAATTGAA AACCCATTGA
    GTTCCTCGCC AAAAGGTGAA ATTTGAGAGA ATGAATCAAC GAGAGAAGCT
    GATTGTTGGT GAAATGTTTG GAGAGTTTCT GTAAATAGAC GCCTCGGATT
    TGGCATTGTT AGTGAAGGTT AAAGGAGTTT CCTAGAAGTT TCAAAGCAAT
    TTGCCTCCAA GTTCTTGACT TATAAAACAT ATTGGAACTA ACATTTCAAG
    AAAGAAGAGA AGGAGATGGG CTGTGTTTCT TCTTGCTTTG GGGTCGATGA
    CTTTGAGGAT TACCCCAATC CAAGTAGTTC TGTTAACAGA AGCTGCCCAT
    GCCCGAGATG TCTTGTTAAC AACTTCCTTA ACCTGTATAT CTCTTTATTC
    AGAAGAGGCG AAACCCGCTC TCTCCCATCC TCCTTACAGG CTACTAATGT
    ATCGATAGCT ACATCAACTT CGTATGATAA CTTTATGTCT AATACATTCC
    ATTCTACTCC AAGGCCTCTG CCTTATGACG CTGATCCAAG ATACTTCCGG
    TCAAGGCGTG ATTCGCTTGT TTCTAGACGC GATAAGGGTT CAAGTCATTC
    TCATGAGGAA GCTGAGCCCT TAAGAAGTGA TGCTGATGTG GATTCTGAGT
    CTTTCTCAGT GGAAGGAAGC AAATGGGCTA ACAAGCTTAT TATCTCTGGT
    GAAGATTCCA AAGAAGAGTT CTCTAGATCC TCTCGGAGGA TTCTTCAGTC
    AAGGACAATG TCTACTAGTA ACGAAGGCCT GTATATAACA TCTGATGATG
    AAGATGTCTG TCCAACGTGT CTTGAAGAAT ACATATCAGA GAACCCGAAG
    ATTGTTACAA AGTGTTCTCA CCATTTCCAC CTCAGTTGCA TTTATGAATG
    GATGGAGAGA AGTGAAAACT GCCCTGTTTG TGGAAAGGTG ATGGAGTTCC
    ACGAAACACC GTAACTTGTT GCCATTGATC CTGTCTTGTA CTGCCTAGAC
    CGGACCTGGG GAGATTGACA AGGCAGCAGA GAGATGTGAA TATATTTTTT
    AACAATATAT GATATTGTAT ATGATGGGGA AATGAGGAAA CGTCTCTCTG
    CACGTTTGGC TTATGGAGTT CTGAGGAAAC CCTCTTGAGA GAAAACAACA
    GCAGCAGCAG AACAGATGCA CACAGGAATC TGACATGTTT CTTAGGATTT
    GCCTTTGGCG CAGTGTTTTG TTCAAGGCAT GAAACTTTTT ACATCATTTT
    GTATGATTAC TTTTAACCTT TTATGAATTT ATGAATATAT ATGTGATGCT
    TGTATTTTGG CATATAGTTT ACATTGGGTA TTTGGGTCAA GGAGAGATCA
    CATTGTAACC CAAATGTTTC TCATTACATG ATAATAAACC AGTGTCATGG
    TTCAGTGTTA AAAAAAAAA

    Gene models with high sequence identity

    1. AT5G15790.2 [+] show detail - RING/U-box superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RING/U-box 0.000000000000023
    Gene3D no description 0.00000000029
    HMMPfam Zinc finger, C3HC4 RING-type 0.00000025
    HMMPanther RING FINGER PROTEIN 24-RELATED 0.000000019
    HMMSmart Zinc finger, RING-type 0.000003
    ProfileScan Zinc finger, RING-type 12.047

    See the detailed result >

    AT5G15790.2

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G02290.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR