F29105

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29105

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29105

Determination of introduced cDNA(s)

  • RAFL04-19-O21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-19-O21 - Resource: pda17005

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-19-O21 - full reading
    GAAGGGTGGT GTCATAAGCG TTTACTGTGA GTCTCTCAAA GAAACCAAAG 
    GCAGAGAAAA GAGATAACAC ACACAAAAAA AAATGGCATC AACCTCACTC
    CTCAAGGCTT CTCCGGTGTT GGACAAATCC GAATGGGTCA AGGGACAAAG
    CGTTCTCTTC CGTCAGCCTT CTTCCGCTTC TGTCGTCCTC CGCAACCGTG
    CCACCTCCCT CACCGTCCGT GCCGCTTCCT CCTACGCCGA TGAGCTTGTT
    AAGACAGCGA AAACTATTGC GTCTCCCGGA CGTGGAATCT TGGCGATGGA
    CGAGTCAAAC GCGACTTGCG GGAAACGTTT GGATTCGATA GGGCTAGAGA
    ACACTGAGGC AAATCGTCAA GCTTTCCGGA CTTTGCTGGT CTCTGCACCG
    GGACTCGGAC AGTACGTCTC CGGCGCAATT CTATTTGAGG AGACTCTGTA
    CCAGTCTACC ACCGAAGGCA AGAAAATGGT CGACGTCCTC GTCGAGCAGA
    ACATTGTCCC TGGTATCAAA GTCGACAAGG GTTTGGTGCC ACTTGTTGGA
    TCCAACAATG AGTCATGGTG CCAAGGACTA GATGGTCTAT CATCTCGAAC
    TGCTGCTTAC TATCAACAGG GTGCGCGTTT CGCCAAATGG CGTACTGTCG
    TGAGCATTCC TAACGGTCCG TCTGCCCTCG CCGTCAAAGA AGCTGCTTGG
    GGTCTTGCTC GATACGCTGC CATTTCACAG GACAGCGGTT TGGTTCCGAT
    TGTTGAGCCA GAGATCTTGT TGGATGGAGA ACACGACATT GACAGAACAT
    ACGACGTAGC AGAGAAGGTT TGGGCTGAGG TTTTCTTTTA CCTTGCTCAG
    AACAATGTCA TGTTTGAAGG TATCCTCCTA AAACCGAGCA TGGTGACTCC
    CGGAGCTGAG TCTAAAGACA GAGCTACTCC TGAACAAGTT GCCGCCTACA
    CCCTCAAGCT CCTCCGCAAC AGAGTCCCTC CCGCAGTCCC CGGAATCATG
    TTTTTGTCCG GAGGACAGTC GGAGGTGGAG GCAACACTCA ACTTGAACGC
    AATGAACCAG GCACCAAACC CATGGCACGT GTCCTTCTCC TACGCACGTG
    CGTTGCAGAA CACTTGTCTG AAAACATGGG GCGGCAGACC CGAGAACGTG
    AACGCAGCTC AGACCACTCT CTTGGCCCGT GCCAAGGCCA ATTCGTTGGC
    TCAGCTCGGA AAATACACCG GTGAGGGTGA GTCCGAAGAG GCTAAGGAGG
    GCATGTTCGT CAAAGGGTAC ACCTATTGAA GAGATGATGC TGTGAAAAAA
    GAGATGAAGC AGATGTTTTA ATCACATTTG TTTTTGAGTT TGCTTGTTAT
    TAATCATGTC AAATCATTAT TTTCTCTGCT TACTTTGCGT TAGCTACTCC
    TTTTAATAAG TTCTATTATA TTGAAGTTAT CTAAAAAAAA AA

    Gene models with high sequence identity

    1. AT4G38970.1 [+] show detail - fructose-bisphosphate aldolase 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Aldolase 8.4e-157
    HMMPanther Fructose-bisphosphate aldolase, class-I 3.8e-268
    HMMPfam Fructose-bisphosphate aldolase, class-I 2.1e-167
    PatternScan Fructose-bisphosphate aldolase, class-I 0
    Gene3D Aldolase-type TIM barrel 2.3e-142

    See the detailed result >

    AT4G38970.1

    Model type
    Protein coding
    Short Description
    fructose-bisphosphate aldolase 2
    Curator Summary
    Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.
    Computational Description
    fructose-bisphosphate aldolase 2 (FBA2); FUNCTIONS IN: fructose-bisphosphate aldolase activity, catalytic activity; INVOLVED IN: response to cadmium ion, pentose-phosphate shunt, response to abscisic acid stimulus; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741); BEST Arabidopsis thaliana protein match is: fructose-bisphosphate aldolase 1 (TAIR:AT2G21330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR