F29105

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29105

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29105

Determination of introduced cDNA(s)

  • RAFL04-19-O21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-19-O21 - Resource: pda17005

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-19-O21 - full reading 
    GAAGGGTGGT GTCATAAGCG TTTACTGTGA GTCTCTCAAA GAAACCAAAG 
    GCAGAGAAAA GAGATAACAC ACACAAAAAA AAATGGCATC AACCTCACTC 
    CTCAAGGCTT CTCCGGTGTT GGACAAATCC GAATGGGTCA AGGGACAAAG 
    CGTTCTCTTC CGTCAGCCTT CTTCCGCTTC TGTCGTCCTC CGCAACCGTG 
    CCACCTCCCT CACCGTCCGT GCCGCTTCCT CCTACGCCGA TGAGCTTGTT 
    AAGACAGCGA AAACTATTGC GTCTCCCGGA CGTGGAATCT TGGCGATGGA 
    CGAGTCAAAC GCGACTTGCG GGAAACGTTT GGATTCGATA GGGCTAGAGA 
    ACACTGAGGC AAATCGTCAA GCTTTCCGGA CTTTGCTGGT CTCTGCACCG 
    GGACTCGGAC AGTACGTCTC CGGCGCAATT CTATTTGAGG AGACTCTGTA 
    CCAGTCTACC ACCGAAGGCA AGAAAATGGT CGACGTCCTC GTCGAGCAGA 
    ACATTGTCCC TGGTATCAAA GTCGACAAGG GTTTGGTGCC ACTTGTTGGA 
    TCCAACAATG AGTCATGGTG CCAAGGACTA GATGGTCTAT CATCTCGAAC 
    TGCTGCTTAC TATCAACAGG GTGCGCGTTT CGCCAAATGG CGTACTGTCG 
    TGAGCATTCC TAACGGTCCG TCTGCCCTCG CCGTCAAAGA AGCTGCTTGG 
    GGTCTTGCTC GATACGCTGC CATTTCACAG GACAGCGGTT TGGTTCCGAT 
    TGTTGAGCCA GAGATCTTGT TGGATGGAGA ACACGACATT GACAGAACAT 
    ACGACGTAGC AGAGAAGGTT TGGGCTGAGG TTTTCTTTTA CCTTGCTCAG 
    AACAATGTCA TGTTTGAAGG TATCCTCCTA AAACCGAGCA TGGTGACTCC 
    CGGAGCTGAG TCTAAAGACA GAGCTACTCC TGAACAAGTT GCCGCCTACA 
    CCCTCAAGCT CCTCCGCAAC AGAGTCCCTC CCGCAGTCCC CGGAATCATG 
    TTTTTGTCCG GAGGACAGTC GGAGGTGGAG GCAACACTCA ACTTGAACGC 
    AATGAACCAG GCACCAAACC CATGGCACGT GTCCTTCTCC TACGCACGTG 
    CGTTGCAGAA CACTTGTCTG AAAACATGGG GCGGCAGACC CGAGAACGTG 
    AACGCAGCTC AGACCACTCT CTTGGCCCGT GCCAAGGCCA ATTCGTTGGC 
    TCAGCTCGGA AAATACACCG GTGAGGGTGA GTCCGAAGAG GCTAAGGAGG 
    GCATGTTCGT CAAAGGGTAC ACCTATTGAA GAGATGATGC TGTGAAAAAA 
    GAGATGAAGC AGATGTTTTA ATCACATTTG TTTTTGAGTT TGCTTGTTAT 
    TAATCATGTC AAATCATTAT TTTCTCTGCT TACTTTGCGT TAGCTACTCC 
    TTTTAATAAG TTCTATTATA TTGAAGTTAT CTAAAAAAAA AA

    Gene models with high sequence identity

    1. AT4G38970.1 [+] show detail - fructose-bisphosphate aldolase 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Aldolase 8.4e-157
    HMMPanther Fructose-bisphosphate aldolase, class-I 3.8e-268
    HMMPfam Fructose-bisphosphate aldolase, class-I 2.1e-167
    PatternScan Fructose-bisphosphate aldolase, class-I 0
    Gene3D Aldolase-type TIM barrel 2.3e-142

    See the detailed result >

    AT4G38970.1

    Model type
    Protein coding
    Short Description
    fructose-bisphosphate aldolase 2
    Curator Summary
    Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.
    Computational Description
    fructose-bisphosphate aldolase 2 (FBA2); FUNCTIONS IN: fructose-bisphosphate aldolase activity, catalytic activity; INVOLVED IN: response to cadmium ion, pentose-phosphate shunt, response to abscisic acid stimulus; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741); BEST Arabidopsis thaliana protein match is: fructose-bisphosphate aldolase 1 (TAIR:AT2G21330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR