F29117

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29117

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29117

Determination of introduced cDNA(s)

  • RAFL09-32-C10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-32-C10 - Resource: pda05899

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-32-C10 - full reading 
    ATCAAGAACC ATAAGCTAAA GAGGGTTCGG TTCTTTAAAC CCCTCCATCT 
    CTCTCTCCTT CATTACACTG TAGAGTGTTA AAGTACCACT CTATAGCCAT 
    GGCTTCCTCT TCTTCATCTC TAGCTTTCTC TCTTTCTCTT CTTCTAGCTT 
    TAATCCTCTG TTTCTCACCC ACCCAATCCT ACAAAACCAT CGGCAAAGGC 
    TACCGTTTGG TCTCCATCGA AGAATCTCCC GACGGTGGTT TCATTGGTTA 
    TCTCCAAGTC AAACAAAAGA ACAAAATCTA CGGCTCTGAT ATCACCACTC 
    TTCGTCTCTT CGTCAAGCAC GAAACTGATT CACGTCTTCG TGTTCACATC 
    ACTGACGCGA AACAACAACG ATGGGAAGTT CCATACAATC TCCTCCCACG 
    AGAACAACCA CCACAAGTCG GAAAAGTCAT CGGAAAATCA AGAAAATCTC 
    CAATCACAGT TCAAGAAATC TCCGGATCCG AACTTATCTT CAGTTACACA 
    ACAGATCCAT TCACTTTCGC CGTGAAACGT AGATCTAACC ACGAAACACT 
    CTTCAACACA ACAAGCTCAT TAGTGTTCAA AGATCAATAC CTAGAGATCT 
    CAACTTCATT ACCAAAAGAA GCTTCACTCT ATGGTTTAGG TGAAAACTCA 
    CAAGCTAATG GTATCAAACT CGTACCTAAC GAGCCTTATA CTCTTTACAC 
    TGAAGATGTT TCAGCTATCA ATCTTAACAC TGACCTTTAT GGTTCGCATC 
    CGATGTATAT GGATCTAAGA AACGTTGGAG GTAAAGCTTA TGCTCATGCT 
    GTTCTTCTTT TGAATAGTAA TGGTATGGAT GTTTTCTATA GAGGTGATTC 
    TTTGACGTAT AAAGTTATCG GAGGTGTTTT CGATTTCTAT TTCATCGCCG 
    GACCGTCGCC GTTAAATGTT GTTGATCAGT ATACTCAGTT AATCGGAAGA 
    CCTGCTCCTA TGCCGTACTG GTCTTTAGGA TTTCATCAAT GTAGATGGGG 
    ATACCATAAT CTATCAGTTG TTGAAGATGT GGTGGATAAT TACAAAAAGG 
    CTAAGATCCC ACTTGATGTG ATTTGGAACG ATGATGATCA CATGGATGGT 
    CACAAAGATT TCACGTTGAA TCCTGTGGCT TATCCTCGTG CTAAGCTATT 
    GGCGTTCTTG GACAAAATCC ACAAGATTGG AATGAAGTAT ATTGTGATCA 
    ATGATCCTGG TATTGGTGTC AACGCTAGCT ACGGTACATT TCAGAGAGCC 
    ATGGCTGCTG ATGTGTTTAT TAAGTATGAA GGAAAGCCAT TCTTGGCTCA 
    AGTGTGGCCT GGTCCGGTTT ACTTCCCTGA TTTCCTTAAC CCGAAGACGG 
    TTTCTTGGTG GGGTGATGAA ATCAAACGGT TCCATGATTT AGTCCCTATT 
    GATGGTTTAT GGATTGACAT GAACGAGGTG TCGAACTTTT GTTCTGGTTT 
    ATGCACAATC CCTGAAGGAA AGCAGTGTCC AAGTGGGGAA GGTCCTGGTT 
    GGGTTTGTTG CTTGGACTGC AAGAATATAA CCAAGACTAG ATGGGATGAT 
    CCTCCTTACA AGATTAATGC TACTGGTGTC GTAGCTCCTG TTGGGTTCAA 
    GACTATTGCT ACAAGTGCTA CTCATTACAA TGGTGTTCGA GAGTACGATG 
    CTCACAGTAT CTACGGATTC TCTGAGACCA TCGCAACTCA CAAGGGCTTA 
    CTTAATGTCC AAGGCAAACG TCCCTTCATT TTATCCCGGT CTACTTTCGT 
    TGGTTCGGGT CAATATGCGG CTCACTGGAC CGGAGATAAC CAAGGAACAT 
    GGCAGAGCTT GCAAGTGTCT ATCTCAACTA TGTTGAACTT CGGTATATTT 
    GGAGTTCCCA TGGTTGGTTC AGACATTTGT GGATTCTACC CACAACCAAC 
    AGAAGAACTC TGCAACCGTT GGATCGAAGT AGGCGCGTTT TACCCGTTTT 
    CAAGAGATCA CGCCAATTAC TACTCACCAA GACAAGAGCT TTACCAATGG 
    GACACAGTTG CAGACTCAGC TCGTAACGCT CTTGGTATGA GATACAAGAT 
    CCTTCCTTTC CTCTACACTC TTAACTACGA AGCGCATATG ACTGGTGCAC 
    CCATCGCTAG ACCGCTCTTC TTCTCATTCC CTGAATACAC CGAATGTTAC 
    GGCAACAGCA GACAGTTCTT GCTTGGAAGC AGCTTCATGA TATCTCCGGT 
    TCTCGAGCAA GGCAAAACCG AAGTAGAAGC ATTGTTCCCA CCAGGTTCTT 
    GGTACCACAT GTTCGACATG ACTCAAGCAG TAGTGTCCAA GAACGGGAAA 
    CGTGTAACTC TCCCAGCTCC TTTGAACTTT GTGAACGTTC ATCTTTACCA 
    AAACACTATC TTACCAACGC AACAAGGCGG GTTGATTTCC AAGGACGCAA 
    GAACAACACC GTTTAGCCTC GTCATTGCTT TCCCTGCAGG AGCTTCTGAA 
    GGTTACGCCA CCGGGAAACT CTATCTAGAC GAAGACGAGC TTCCGGAAAT 
    GAAGCTAGGA AATGGACAGT CCACGTACGT TGACTTCTAC GCTTCGGTCG 
    GAAACGGGAC AATGAAGATG TGGTCACAAG TTAAAGAAGG TAAGTTTGCA 
    TTGAGCAAAG GATGGGTGAT TGAGAAAGTG AGTGTTTTGG GACTTAGAGG 
    AGCAGGACAA GTGTCTGAGA TTCAAATCAA TGGAAGTCCA ATGACAAAGA 
    AGATTGAGGT TAGCTCGAAG GAGCATACCT ATGTGATTGG TTTGGAAGAT 
    GAAGAAGAGA ACAAGAGTGT GATGGTTGAG GTTAGAGGAC TTGAGATGCT 
    TGTTGGAAAG GATTTTAACA TGTCCTGGAA AATGGGTATC AATTAATTTA 
    CATGTGAGAG TTGGTAAACT ATTGAGGAGG AGAATGAGAT TATTTAAAAA 
    AAAAGGGTAA TGTTTTGTTC TTCTCCATTT CGGATTATAA GAAAGAAAAA 
    AAGAATTAGA GGTTTGGTTT TAGATTGTGT CTCTGTCTTT TTATTAAAAG 
    ATGCTTTAGT CTGAATAAAA TTTGAAGCAG AAGAAGTGTT ACTTCATTGG 
    CTTATCT

    Gene models with high sequence identity

    1. AT1G68560.1 [+] show detail - alpha-xylosidase 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ALPHA-GLUCOSIDASE 0
    HMMPanther Glycoside hydrolase, family 31 0
    PatternScan Glycoside hydrolase, family 31 0
    superfamily Glycoside hydrolase, catalytic core 3.1e-14
    HMMPfam Glycoside hydrolase, family 31 1.1e-166

    See the detailed result >

    AT1G68560.1

    Model type
    Protein coding
    Short Description
    alpha-xylosidase 1
    Curator Summary
    Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.
    Computational Description
    alpha-xylosidase 1 (XYL1); FUNCTIONS IN: xyloglucan 1,6-alpha-xylosidase activity, xylan 1,4-beta-xylosidase activity, alpha-N-arabinofuranosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to cadmium ion, xylan catabolic process, xyloglucan metabolic process; LOCATED IN: apoplast, cell wall, chloroplast, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 31 (InterPro:IPR000322), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolases family 31 protein (TAIR:AT3G45940.1); Has 6339 Blast hits to 5059 proteins in 1114 species: Archae - 86; Bacteria - 4145; Metazoa - 817; Fungi - 695; Plants - 269; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR