F29150

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29150

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
T2  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29150

Determination of introduced cDNA(s)

  • RAFL09-12-L09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-12-L09 - Resource: pda01667

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-12-L09 - full reading
    GATCGCATGT GGTAGTTCCT TTTTGGATCA GTGGTTTTTG AAATGGAGAA 
    AGTTTCGTCG CCGTCTTCCT CTTTTTCACG GAGGTCTGCT TATCTTGAAG
    CTCTTACACA AGAGATTAAG AAGAAGCTTA CACGGGCTGT TGTCTCTCCA
    GCACAAACAC GCAACTTGTT ACAAGACTTA TTTGCTGATA TAGCTCTCGA
    AGTAGACGAT CGAGCCAAAG ATGTGATCCT TAGCAAAGAA GAGGATTTGA
    TTACTTCTGA TGAAGCAGAT GCTGATGGTC CGTTATGCTT TTTCGATGTC
    CTTGCTGATT ACTATGTGAA AGTGTCTGAG AGGGGGAAGG ATATACTTGA
    TTTGATGGTG CAGCTGTGGA GCCAGTCCTT TGCATCACAT ATATTCTCTC
    TACTGTTCCA TAAATGGCTG TTTGAGGTTG AGCTTGACAA TCAAGAAATA
    CTCCTGCGAT ATTCTTCGGC TCTGGTGCAG GGAGCAACAA ATGTGTTCTG
    GATAGACATC CAGACAAATA CGAGGCGCTT CCAAAGTCTC TTTCGGTATC
    TCCTTGAGGA AGTTGCTTTG GAGCAGATAC GATTGAAAAA ATTCCCATTC
    AGGCTCAGAG GGAACTGTAT CTCTTACTCT CTAGGTTCAT TTTCTTTTAC
    AATTCAGTGG ATAAACTCGA TAGCTTCTTG AGGAACTTCC CAGAGTTTCC
    AAATGCTTTC TTGATTGGAG GACCTGGAGA TTTCCTTGTT ATCGAACTAA
    CTGATCAGCT GCAAAAACTG AAGGTGGAAC CAGTGCTGCT ACATTATCTT
    TCTCAGATGA AGATTCTTCA AGGTATGGAA CTGAGAATGA CTACTAGCAC
    AAGGTTAAAG GCGTGTTTAT ACAGTTTTAC CTCTCCTGGA GGTCCAATGT
    ACCCGACAAG AGCCGTCCGT CATGCAGCCT GGGATGCTTT GGATTCCCTC
    TTTCCTGTTG GGCGTTACCC GAGGCATCTC ATTAGTCTAT TTTTCAGGCT
    GCTATATCCG TGGTACTGGC CATCCTCATG CTGGAACTTT GTGGTTTCTT
    GCATTAAGGC GGTACTCTAT TCTATCGTAA GGCTCATCTT TTCACGGCGA
    GAAAAGCCAA GGCAGAGCTG AATAGCTTTT ACTTTTGATG AAGCTTACAG
    CAGGAATCCA ATCCTTGTGT ATATAATGTG GTTTTGGTCA AAGAGGCAAA
    CCAGTGAACC TTACCTTCAC CTGTATTACT GTCTACAGAG AAGATAAACT
    CCGTTTTGTG AAAGATCCCA TGGATAAGCT TTTGACTTGT TTTGTTGTCA
    TTGGTAAAAT TGTTATTTTG CTATAGAGGA CGTGTATTGT GTCCAGAAAC
    CCTTCTTGTG TAGAAGATAA ACCATTTCGG CCTTCTGTTT TAGTTGTATT
    GGATCTGTAA GAACTAAGAA CCCTTAAACT TTTCACCATT CATGGACCAT
    GATATCATCT

    Gene models with high sequence identity

    1. AT5G59960.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
      E-value: 0; Score: 99.93

     

    InterPro Scan Digest

    See the detailed result >

    AT5G59960.1

    Model type
    Protein coding
    Computational Description
    unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR