F29151

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29151

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29151

Determination of introduced cDNA(s)

  • RAFL16-28-F15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL16-28-F15 - Resource: pda19585

    full reading [+] show sequence

    Nucleotide sequence: RAFL16-28-F15 - full reading
    AATAATCGCT TCTTCTTCTT CTTCTTCTTC CTCAATCTCC CAATCGTCTC 
    TTCCATCAAG CTCCCAACAA TGGCGACGGA GCTTAACCCT AAGAACTTCC
    CTGTTCTCTC TTATGTCTTG GATCGTCTCC CTTCATTCAC CGCCAAATCC
    TCTTCCTCTT CCGATGTCGA GCCACCACCA TCCAAATCCG ATCCTTCTTC
    ATCATCAAAC CACTCTATCG AGATAGTGAC TCAGATGCCT CACTTGGCTC
    ATCCTGATGT TCTTGCCTCC ATGACTAACG CAACCGCCGA CGTTTCTCAG
    ACCCGATCTG TTCTTCGAAC CCTAGGACCA AGACCCGATC ACGAAACCGT
    CGACAGAGCT CGTGCTAGGC TCCGTGAGAT CGACGCGTCT TTGTCGGAAT
    CTTTCGAAGA GATCGCTCTC TCTCCTAACG ATATTGACGT GGCGGAGAAG
    GAACAGAAGA GGAGAGAAGC TGTGGAGCAA GAGAAGATTT GGTATAAATC
    GATCCTTAAG CTTAACGAGC TTCATGAATC TTATGAGAAG CTTTTGAAAG
    AAGCAGAGGA GAGGCTCGTG AGGATCTATG AGTCTGCCGA GAAGAATGCT
    GCCGCGGTGG CGGAGGAGGA AGCTGCGGAG GTTGAAGTCA ATGAAGAGGT
    TGTGAGTATA CTGCAACAAG CTGCGGAGAA TCCATTGGAC CGAGTTGATT
    TGTCTGGTCG GAAATTGAAG TTGCTTCCTG AAGCATTTGG AAAGATTCAA
    GGTCTCCTTG TTCTTAATCT CTATAACAAT CAGCTTCAGG CTATTCCTGA
    TTCGATAGCT GGTTTGCATA ACCTTCTCGA ACTCGATGTT TCCACTAATT
    TCCTGGAGAC ATTACCAGAT TCGATCGGTT TATTGTCAAA GTTGAAGATT
    TTGAATGTCT CTTGTAACAA ACTCACAACT TTACCAGATT CCATCTGCCA
    TTGTGGATCG TTGGTTGTCT TGGATGCGAG CTACAACAAT CTCACCTACT
    TACCAACAAA CATCGGATTC GAGCTAGTGA AACTAGAGAA GCTCTTGATC
    CATCTCAACA AAATCAGATC ATTACCAACT TCCATTGGTG AAATGAGATC
    CTTACGCTAC CTCGATGCAC ACTTCAACGA ACTCAATGGT CTCCCAAATT
    CTTTCGGGCT GCTCACGAAC CTCGAGTACC TTAACCTGAG CAGTAACTTC
    AGCGATCTCC AAGATCTCCC TGCTTCATTC GGAGATCTCA TAAGCCTCCA
    AGAACTCGAC TTGAGCAACA ACCAGATCCA TTCTCTTCCA GACGCTTTTG
    GCACGCTCGT GAACTTGACC AAACTGAACT TGGACCAAAA CCCGCTTGTT
    GTCCCGCCTG ATGAAGTCGT GAAACAAGGT GTGGATGCGG TTAAAATGTA
    TATGGGTAAG AGATGGGTCA GCATGTTGGA AGAGGAAGAG AAGATGGCGA
    ATATGAAGGA TGAGATGGAT CAGACAAACA CCGATTGGCT CACCCGAACC
    ACCTCGAAGC TGAAAACGTA TGTTACTGAG GTCTCGGAGT ATCTTGGCTC
    GAATCCGCCT AGAGATCCTT ACCTTGACCA GCAGCTATGA AATGACTTTG
    AGCTTCATTT TACATTTTCG TGACGATATC TCAAGTATCA GTTTCCAAAG
    TGATCTTCAG TCTTGAGTTT TCCTGCCGCT GCTTCTCTGT TTCGGTATAT
    AGTTTTTTTT TCTCTTTTAT TTGCTTCTAC TCTTTACTGT TGTTTATTCG
    TATTTGTCTC ATAACATTTC ATTTATTTGT TTACCTTTTT TTTTCTTTTT
    TCTGAAAGAA TTTTATGTTC CTTCAACAAT TTTGAGAGAT GGTAACAGAA
    GTTCTTTTTT CAAGTTTAAA AAAGAAA

    Gene models with high sequence identity

    1. AT5G05850.1 [+] show detail - plant intracellular ras group-related LRR 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4.4e-165
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4.4e-165
    HMMSmart no description 53
    HMMSmart Leucine-rich repeat, typical subtype 16
    HMMSmart no description 4.6
    HMMSmart Leucine-rich repeat, typical subtype 14
    HMMSmart no description 0.0082
    HMMSmart Leucine-rich repeat, typical subtype 0.01
    HMMSmart no description 28
    HMMSmart Leucine-rich repeat, typical subtype 120
    HMMSmart no description 330
    HMMSmart Leucine-rich repeat, typical subtype 57
    HMMSmart no description 140
    HMMSmart Leucine-rich repeat, typical subtype 17
    HMMSmart no description 190
    HMMSmart Leucine-rich repeat, typical subtype 54
    HMMSmart no description 20
    HMMSmart Leucine-rich repeat, typical subtype 0.0015
    HMMSmart Leucine-rich repeat, typical subtype 45
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPfam Leucine-rich repeat 0.27
    HMMPfam Leucine-rich repeat 0.013
    HMMPfam Leucine-rich repeat 0.36
    HMMPfam Leucine-rich repeat 0.14
    HMMPfam Leucine-rich repeat 0.0014
    Gene3D no description 5.9e-45
    superfamily L domain-like 1e-58

    See the detailed result >

    AT5G05850.1

    Model type
    Protein coding
    Short Description
    plant intracellular ras group-related LRR 1
    Curator Summary
    Encodes PIRL1, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction. PIRL1 (AT5G05850) and PIRL9 (AT3G11330) are genetically redundant and are required for differentiation of microspores into pollen.
    Computational Description
    plant intracellular ras group-related LRR 1 (PIRL1); INVOLVED IN: microgametogenesis, pollen development; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 9 (TAIR:AT3G11330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR