F29216

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29216

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Original: F29216

Determination of introduced cDNA(s)

  • RAFL09-34-E14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-34-E14 - Resource: pda06049

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-34-E14 - full reading 
    AGAGTTGGAA TTTTCCCGGG GAAGCTCTTT TCAATGGAGG TCCTTGCGAG 
    CTCTTCATTA TCCCCAATTT CTTTTACTAA GCCTAACAAA ATAAACCCTA 
    ATTTCTCAAT CCAGGTGAAA TTGTGGGTAA AACAACCTCC AAAGATTTCA 
    AAAGCTAGCA AATTTAGTTA TGCTCGTAGT CGTAGTAACA TTTCAAGGAG 
    CAATGCAGCA AACCCAGGAG TCGTGTTCGT CTGTAATAGA TTTCTGTGTG 
    TTATCGAAAG AAATGATCAG AGGAAATTAT CTGGGAAGGT TATGATGAAA 
    TCTTCTGTTA ATTTCAGACA GAATCTCTCT GTTGCATTAG TTCGGATCGT 
    TTCTGTTCTG CTTGTCTCTT CCATTTCTGT TGTTACCACT GATTCACCAC 
    CATCATGGGG TCTTACTGAA GAGAATCTTC TCTTCCTCGA GGCTTGGAGA 
    ACAATTGATC GTGCTTATAT TGATAAAACC TTTAATGGAC AAAGCTGGTT 
    TCGTTACAGA GAGACTGCTT TACGAAATGA GCCTATGAAC ACTCGAGAAG 
    AGACATACAT GGCTATCAAG AAAATGGTGG CAACACTAGA TGATCCTTTT 
    ACTCGATTCT TGGAGCCCGG AAAGTTCAAG AGTTTGCGGT CGGGGACTCA 
    AGGGGCGGTT ACGGGTGTTG GGCTGTCGAT AGGTTACCCC ACTGCATCAG 
    ATGGACCACC AGCTGGGCTT GTTGTTATAT CAGCTGCTCC AGGAGGTCCT 
    GCAAATAGGG CGGGGATATT ACCTGGCGAT GTTATTCAAG GAATTGATAA 
    TACAACCACA GAAACTCTTA CCATATACGA TGCTGCACAG ATGTTGCAGG 
    GACCTGAAGG AAGTGCAGTG GAGCTAGCGA TTCGCAGTGG ACCTGAAACG 
    AGACTCTTAA CTTTGACGCG AGAGCGGGTT TCTGTGAATC CAGTGAAGTC 
    AAGATTATGT GAACTTCCTG GTTCTGGGAG TAACTCCCCT AAGATTGGCT 
    ATATCAAGCT AACAACATTC AATCAAAATG CTTCTAGTGC GGTAAGGGAA 
    GCTATTGAAA CCTTGAGAGG CAACAATGTA AACGCATTCG TCTTGGACCT 
    TCGAGACAAT AGTGGAGGTT CTTTCCCAGA AGGAATTGAG ATTGCTAAAT 
    TTTGGTTAGA TAAAGGAGTG ATTGTGTATA TTTGCGATAG TCGAGGTGTT 
    AGAGATATAT ATGATACTGA TGGAAGCAAT GCTATAGCAA CCTCTGAGCC 
    TCTTGCCGTT CTTGTTAACA AAGGCACCGC GAGTGCCAGC GAGATATTAG 
    CAGGTGCCTT GAAAGATAAT AAACGTGCTC TGGTTTATGG AGAACCAACT 
    TACGGAAAAG GCAAGATACA GTCGGTTTTT GAGCTTTCTG ATGGTTCGGG 
    CTTGGCAGTA ACAGTTGCTC GATATGAAAC ACCAGCTCAC ACAGATATAG 
    ACAAAGTCGG TGTAACTCCT GATCATCCAT TGCCAAAGTC GTTTCCGAAA 
    GATGAAGAGG CGTTCTGTGG ATGCCTTAAG GATCCTACAG CTGCTTGTTA 
    TCTCAATCAA GGCCTACTTT TTTCTAGATG ATTTTGTTTT GTTCAAACTT 
    TGTTCTGACA ACATATGACT AAAATTTATT GACTCAAGCT TTGTACTTTT 
    GAAGATTCGC CATAGCTTTA GCTAATCGAA ACCAGAAATT TC

    Gene models with high sequence identity

    1. AT4G17740.1 [+] show detail - Peptidase S41 family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Peptidase S41A, C-terminal peptidase 3e-84
    superfamily ClpP/crotonase 7.7e-76
    superfamily PDZ/DHR/GLGF 1.6e-17
    ProfileScan PDZ/DHR/GLGF 11.843
    Gene3D no description 1e-29
    Gene3D no description 1e-46
    HMMPanther SERINE PROTEASE HTRA2 0.00014
    HMMPanther SERINE PROTEASE FAMILY S1C HTRA-RELATED 0.00014
    HMMSmart PDZ/DHR/GLGF 2e-13
    HMMSmart Peptidase S41 7.4e-96
    HMMPfam Peptidase S41 1.5e-50
    HMMPfam PDZ/DHR/GLGF 1.1e-07

    See the detailed result >

    AT4G17740.1

    Model type
    Protein coding
    Short Description
    Peptidase S41 family protein
    Computational Description
    Peptidase S41 family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis, intracellular signaling pathway; LOCATED IN: thylakoid, thylakoid lumen, mitochondrion, chloroplast thylakoid lumen; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S41 (InterPro:IPR005151), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase S41A, C-terminal peptidase (InterPro:IPR004447); BEST Arabidopsis thaliana protein match is: Peptidase S41 family protein (TAIR:AT3G57680.1); Has 9204 Blast hits to 9194 proteins in 1993 species: Archae - 0; Bacteria - 5702; Metazoa - 14; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 3335 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR