F29216

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29216

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Original: F29216

Determination of introduced cDNA(s)

  • RAFL09-34-E14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-34-E14 - Resource: pda06049

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-34-E14 - full reading
    AGAGTTGGAA TTTTCCCGGG GAAGCTCTTT TCAATGGAGG TCCTTGCGAG 
    CTCTTCATTA TCCCCAATTT CTTTTACTAA GCCTAACAAA ATAAACCCTA
    ATTTCTCAAT CCAGGTGAAA TTGTGGGTAA AACAACCTCC AAAGATTTCA
    AAAGCTAGCA AATTTAGTTA TGCTCGTAGT CGTAGTAACA TTTCAAGGAG
    CAATGCAGCA AACCCAGGAG TCGTGTTCGT CTGTAATAGA TTTCTGTGTG
    TTATCGAAAG AAATGATCAG AGGAAATTAT CTGGGAAGGT TATGATGAAA
    TCTTCTGTTA ATTTCAGACA GAATCTCTCT GTTGCATTAG TTCGGATCGT
    TTCTGTTCTG CTTGTCTCTT CCATTTCTGT TGTTACCACT GATTCACCAC
    CATCATGGGG TCTTACTGAA GAGAATCTTC TCTTCCTCGA GGCTTGGAGA
    ACAATTGATC GTGCTTATAT TGATAAAACC TTTAATGGAC AAAGCTGGTT
    TCGTTACAGA GAGACTGCTT TACGAAATGA GCCTATGAAC ACTCGAGAAG
    AGACATACAT GGCTATCAAG AAAATGGTGG CAACACTAGA TGATCCTTTT
    ACTCGATTCT TGGAGCCCGG AAAGTTCAAG AGTTTGCGGT CGGGGACTCA
    AGGGGCGGTT ACGGGTGTTG GGCTGTCGAT AGGTTACCCC ACTGCATCAG
    ATGGACCACC AGCTGGGCTT GTTGTTATAT CAGCTGCTCC AGGAGGTCCT
    GCAAATAGGG CGGGGATATT ACCTGGCGAT GTTATTCAAG GAATTGATAA
    TACAACCACA GAAACTCTTA CCATATACGA TGCTGCACAG ATGTTGCAGG
    GACCTGAAGG AAGTGCAGTG GAGCTAGCGA TTCGCAGTGG ACCTGAAACG
    AGACTCTTAA CTTTGACGCG AGAGCGGGTT TCTGTGAATC CAGTGAAGTC
    AAGATTATGT GAACTTCCTG GTTCTGGGAG TAACTCCCCT AAGATTGGCT
    ATATCAAGCT AACAACATTC AATCAAAATG CTTCTAGTGC GGTAAGGGAA
    GCTATTGAAA CCTTGAGAGG CAACAATGTA AACGCATTCG TCTTGGACCT
    TCGAGACAAT AGTGGAGGTT CTTTCCCAGA AGGAATTGAG ATTGCTAAAT
    TTTGGTTAGA TAAAGGAGTG ATTGTGTATA TTTGCGATAG TCGAGGTGTT
    AGAGATATAT ATGATACTGA TGGAAGCAAT GCTATAGCAA CCTCTGAGCC
    TCTTGCCGTT CTTGTTAACA AAGGCACCGC GAGTGCCAGC GAGATATTAG
    CAGGTGCCTT GAAAGATAAT AAACGTGCTC TGGTTTATGG AGAACCAACT
    TACGGAAAAG GCAAGATACA GTCGGTTTTT GAGCTTTCTG ATGGTTCGGG
    CTTGGCAGTA ACAGTTGCTC GATATGAAAC ACCAGCTCAC ACAGATATAG
    ACAAAGTCGG TGTAACTCCT GATCATCCAT TGCCAAAGTC GTTTCCGAAA
    GATGAAGAGG CGTTCTGTGG ATGCCTTAAG GATCCTACAG CTGCTTGTTA
    TCTCAATCAA GGCCTACTTT TTTCTAGATG ATTTTGTTTT GTTCAAACTT
    TGTTCTGACA ACATATGACT AAAATTTATT GACTCAAGCT TTGTACTTTT
    GAAGATTCGC CATAGCTTTA GCTAATCGAA ACCAGAAATT TC

    Gene models with high sequence identity

    1. AT4G17740.1 [+] show detail - Peptidase S41 family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Peptidase S41A, C-terminal peptidase 3e-84
    superfamily ClpP/crotonase 7.7e-76
    superfamily PDZ/DHR/GLGF 1.6e-17
    ProfileScan PDZ/DHR/GLGF 11.843
    Gene3D no description 1e-29
    Gene3D no description 1e-46
    HMMPanther SERINE PROTEASE HTRA2 0.00014
    HMMPanther SERINE PROTEASE FAMILY S1C HTRA-RELATED 0.00014
    HMMSmart PDZ/DHR/GLGF 2e-13
    HMMSmart Peptidase S41 7.4e-96
    HMMPfam Peptidase S41 1.5e-50
    HMMPfam PDZ/DHR/GLGF 1.1e-07

    See the detailed result >

    AT4G17740.1

    Model type
    Protein coding
    Short Description
    Peptidase S41 family protein
    Computational Description
    Peptidase S41 family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis, intracellular signaling pathway; LOCATED IN: thylakoid, thylakoid lumen, mitochondrion, chloroplast thylakoid lumen; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S41 (InterPro:IPR005151), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase S41A, C-terminal peptidase (InterPro:IPR004447); BEST Arabidopsis thaliana protein match is: Peptidase S41 family protein (TAIR:AT3G57680.1); Has 9204 Blast hits to 9194 proteins in 1993 species: Archae - 0; Bacteria - 5702; Metazoa - 14; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 3335 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR