F29220

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29220

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29220

Determination of introduced cDNA(s)

  • RAFL09-69-H12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-69-H12 - Resource: pda06659

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-69-H12 - full reading 
    AATTTCGTTT CTTTCCTTCT TCACTCGTTA AATTTTCGTT TAATCAGACA 
    TCGATCTCAA AAGCTCTCAT CTTCAATCTC ATTGAGAATG GATCATGATC 
    TCGAGATCTT CCCTTTACTC TCCTACGTCC TCCACCATTC CGATCCCGCT 
    TCTCACGCGC CACCGTCTCT AGCGATTCAG CAATCTCTTG CGAATCGTTA 
    TCCCCTTCTC ACCAATCCTT ATGTAATCTC CTCGTTGATT GAATCAATTC 
    CCAGTACAAT CACGCAGACC CTTTTCGTAT TTGGCTCTCT TGGGCCACGA 
    CCTGATCCTT TAGCTGTCTC TTCTGCTCGG TCTAAGATCC GAGAGATCAA 
    AGAGAATGAT TCTTTATCGC CGGAAGATGC GGCTAAGGAA GAGCAGGTTT 
    ACGCTGCGGT TGTGAGTTTA GAGGAAGTTC ATGAAGGATA TGAGAAGCAG 
    TTAAGAGATT TGGAGGAGGA GATTGGTAGG GTTTATGCTT CGGCGGTTGA 
    ATCATTGAGC GGTGGTGATG AAGTGAATGA GGAGGTTTTA GCGGTGATTA 
    AAGACGCTGA AGATGGTGGA GTCGTTGAAA GGATTGATCT TTCTGATCAT 
    GAGCTTAAGC TTCTTCCTGA TGCTTTAGGG AAAATCGTCG GTTTGGTTTC 
    ACTGAATGTC TCTCGTAACA ATCTCAGGTT TCTACCTGAT ACAATCTCAG 
    GACTTGAGAA ACTGGAGGAG CTAGATTTAT CTTCAAACCG TCTCGTGTTT 
    CTTCCCGACT CTATTGGACT GTTACTTAAT TTGAGGATCT TAAATGTGAC 
    GGGGAACAAG CTAACTTTAC TCCCAGAAAG CATTGCGCAA TGCAGGTCAC 
    TGGTAGAGTT AGATGCCAGC TTCAACAACT TGACTTCTTT GCCTGCAAAC 
    TTCGGATACG GATTACTCAA TCTCGAAAGG CTATCGATCC AGCTGAACAA 
    AATCCGTTTC TTCCCCAATT CCATATGTGA GATGCGTTCT CTAAGGTATC 
    TCGACGCACA CATGAACGAA ATCCACGGCC TTCCAATCGC TATAGGGAGA 
    CTCACAAACC TTGAAGTCAT GAACTTGAGC AGCAACTTCA GCGACTTGAT 
    TGAACTTCCT GACACAATCT CTGATTTAGC TAACTTGAGG GAGCTAGATC 
    TCAGCAACAA CCAGATCAGA GTCTTGCCTG ACTCGTTTTT CAGGCTGGAG 
    AAGCTGGAGA AACTGAACTT GGACCAGAAC CCTTTGGAGT ATCCCCCACA 
    AGAGATGGTT AACCAAAGCG CTGAAGCAGT TCGAGAGTTC ATGAGGAAGA 
    GGTGGGAAGA GATGGTGGAG GAAGAGCAAT TGAGGAGTGT GATTGAAGCT 
    GAGAAGCAAC AAGGAGGAGC AACAGGTTGG CTCTCATGGG GGAGCTCCAT 
    TGTTACTAGC CTTTTCTCTG GAGGTACTCA TGGTGGTGCA GCTAAGAAGC 
    CTAAAAACTC ATTTTTGGAT GAACAGCTCT GATTTTTTTT TTTTTTTGGC 
    TTTACTATAT CTAGCTAGCT TTGACGTTTT TTAGAAAAAG AAAAAAATCC 
    GGAGTTTGGA CGTTTGACTT GACTGTATTT CAATGGGCCT TTAATAACCC 
    TTCTGAGGCC CATCTTGGGG TTATGTTTGG GTAACATTAC T

    Gene models with high sequence identity

    1. AT1G12970.1 [+] show detail - plant intracellular ras group-related LRR 3
      E-value: 0; Score: 99.88

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Toll-like receptor, leucine rich repeat-containing 2.2e-05
    FPrintScan Toll-like receptor, leucine rich repeat-containing 2.2e-05
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 5.3e-155
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 5.3e-155
    HMMPfam Leucine-rich repeat 0.018
    HMMPfam Leucine-rich repeat 0.16
    HMMPfam Leucine-rich repeat 0.11
    HMMPfam Leucine-rich repeat 0.00065
    Gene3D no description 3.4e-40
    superfamily L domain-like 6.6e-50
    Coil coiled-coil 0
    HMMSmart no description 39
    HMMSmart Leucine-rich repeat, typical subtype 24
    HMMSmart no description 14
    HMMSmart Leucine-rich repeat, typical subtype 0.45
    HMMSmart no description 12
    HMMSmart Leucine-rich repeat, typical subtype 0.75
    HMMSmart no description 5
    HMMSmart Leucine-rich repeat, typical subtype 34
    HMMSmart Leucine-rich repeat, typical subtype 170
    HMMSmart Leucine-rich repeat, typical subtype 34
    HMMSmart no description 210
    HMMSmart no description 4.9
    HMMSmart Leucine-rich repeat, typical subtype 1.3e-05

    See the detailed result >

    AT1G12970.1

    Model type
    Protein coding
    Short Description
    plant intracellular ras group-related LRR 3
    Curator Summary
    Encodes PIRL3, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.
    Computational Description
    plant intracellular ras group-related LRR 3 (PIRL3); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 2 (TAIR:AT3G26500.1); Has 74858 Blast hits to 31563 proteins in 1228 species: Archae - 19; Bacteria - 7206; Metazoa - 30749; Fungi - 2417; Plants - 30057; Viruses - 17; Other Eukaryotes - 4393 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR