F29242

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29242

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F29242

Determination of introduced cDNA(s)

  • RAFL09-48-L24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-48-L24 - Resource: pda06403

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-48-L24 - full reading
    AAAAGACTAT CAAAAGAAGA AACAGAGCAA ATTTCATTCT CTCAGAACAA 
    ATATATACAT ATTAATCAGA ATCAGGAAAA GTGAAGAAGC GAAAGAGAGA
    AGAAGATCGG ATGGGAGTGG ATTACTACAA AGTCCTCCAA GTCGATCGCA
    GCGCAAGCGA CGATGATCTC AAGAAAGCTT ATCGTAAACT TGCCATGAAA
    TGGCATCCCG ACAAAAATCC CAACAACAAA AAGGATGCCG AAGCTATGTT
    CAAACAAATA TCCGAAGCTT ACGAGGTACT AAGTGATCCT CAGAAGAAAG
    CTGTGTATGA TCAATATGGT GAGGAAGGTT TGAAAGGGAA CGTGCCACCT
    CCGGATGCAG GTGGAGCTAC TTACTTCTCT ACCGGGGATG GTCCAACGTC
    CTTCAGGTTC AACCCGAGAA ATGCGGATGA TATATTTGCT GAGTTCTTTG
    GCTTCTCTAG CCCATTTGGC GGCGGAAGAG GTGGTACAAG ATTCTCTAGC
    AGCATGTTTG GTGATAATAT GTTTGCTTCT TTCGGCGAAG GAGGAGGCGG
    TGGTGGTGGC TCGATGCATC ACGGTGGAGC TAGGAAGGCT GCTCCTATCG
    AAAACAAGTT GCCTTGTAGC CTTGAAGATC TTTACAAAGG AACCACCAAA
    AAGATGAGGA TTTCTAGGGA GATTGCTGAT GTCAGTGGCA AGACGATGCA
    GGTGGAAGAG ATTTTGACCA TTGATGTGAA ACCAGGATGG AAGAAAGGCA
    CAAAGATCAC GTTCCCAGAG AAAGGCAATG AGCAACCCGG TGTGATTCCA
    GCGGATTTAG TCTTCATAAT CGACGAGAAG CCTCACCCGG TTTTCACTCG
    AGAGGGTAAC GACCTCATAG TCACACAGAA GATCTCACTT GTTGAGGCCT
    TGACTGGTTA CACAGTGAAC CTGACTACTC TTGATGGTCG GAGACTGACA
    ATTCCAGTCA CCAACGTGGT CCATCCCGAG TACGAGGAAG TGGTACCGAA
    GGAAGGGATG CCATTGCAAA AAGACCAGAC TAAGAGAGGT AACTTGAGGA
    TCAAATTTAA CATCAAGTTC CCTACAAGGT TAACCTCAGA GCAGAAGACA
    GGAGTGAAGA AACTTCTCGG ATGAAATGAG TTATAGTCAG CACATTTCAG
    ACAAAACAAT GTTGAACAGA AGAGGAACAA GAAAATCATG TTGCAGACCA
    CAGGGATTGT GATTAAATAC TGTTGTGACC TTTTTGATCG ATTTGTAACA
    TATGTACGAT TGGATACCTC CTAATAAATT TGTTACTTTC TCTAC

    Gene models with high sequence identity

    1. AT2G20560.1 [+] show detail - DNAJ heat shock family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Heat shock protein DnaJ, N-terminal 1e-27
    Gene3D no description 1.6e-25
    Gene3D no description 1.5e-25
    ProfileScan Heat shock protein DnaJ, N-terminal 24.541
    HMMPanther HSP40-RELATED 6.9e-189
    HMMPanther Molecular chaperone, heat shock protein, Hsp40, DnaJ 6.9e-189
    PatternScan Heat shock protein DnaJ, conserved site 0
    HMMSmart Heat shock protein DnaJ, N-terminal 4.4e-33
    superfamily Heat shock protein DnaJ, N-terminal 3.2e-33
    superfamily HSP40/DnaJ peptide-binding 6.4e-22
    superfamily HSP40/DnaJ peptide-binding 8.2e-17
    HMMPfam Chaperone DnaJ, C-terminal 4.4e-30
    HMMPfam Heat shock protein DnaJ, N-terminal 5.9e-28

    See the detailed result >

    AT2G20560.1

    Model type
    Protein coding
    Short Description
    DNAJ heat shock family protein
    Computational Description
    DNAJ heat shock family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT4G28480.1); Has 27936 Blast hits to 27733 proteins in 3449 species: Archae - 187; Bacteria - 10270; Metazoa - 4781; Fungi - 2609; Plants - 2869; Viruses - 17; Other Eukaryotes - 7203 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR