F29245

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small)
	rosette leaf (PO:0000014)	increased size (PATO:0000586) (Rosette leaf::Shape::large) upturned (PATO:0002031) (Rosette leaf::Shape::hyponastic) abnormal (PATO:0000460) (Rosette leaf::Others) increased width (PATO:0000600) (Rosette leaf::Shape::wide)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29245

Determination of introduced cDNA(s)

RAFL06-82-P06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-82-P06 - Resource: pda03841

full reading [+] show sequence

ACCCATCAAG TCCCAATTCC CAACACTGTC ACTCAAAAAG AATCTTCAAA 
CAATGAATCT CAACGTCGTC GTTTTACTCC TACTCCTTCT AATCTCATCC 
GCCACGTGTT GTCCGCCGTC AGACCGCCGT GCACTTCTAG CTTTCCGATC 
AGCTCTTCAC GAGCCTTACC TCGGCATTTT CAACTCATGG ACAGGCCAAG 
ACTGTTGCCA CAACTGGTAC GGTATTAGCT GCGACTCGCT CACTCACCGA 
GTCGCCGACA TAAATCTCCG CGGCGAGTCA GAAGATCCAA TCTTCGAACG 
AGCTCACCGA ACCGGTTACA TGACCGGACA CATCTCCGCC TCGATATGTG 
AGCTCACTCG TCTCTCCGCC ATTACAATCG CCGATTGGAA AGGTATCTCC 
GGCGAAATCC CTAAATGTAT CACTCGTCTT CCTTTTCTCC GTACACTCGA 
CTTAATCGGA AACCAAATCT CCGGTGGGAT TCCATACGAC ATCGGAAGAT 
TAAACCGGTT AGCTGTTTTA AACGTAGCCG ATAACCGAAT CTCCGGTTCA 
ATTCCAAAAT CATTAACCAA TCTCTCTAGC TTAATGCATT TAGATCTCCG 
TAACAACTTA ATCTCCGGTG TAATCCCGTC GGACGTCGGA AGATTAAAAA 
TGCTCAGCCG TGCGTTATTA TCCGGTAACC GAATAACCGG TCGGATCCCA 
GAATCATTAA CCAATATCTA CCGGTTAGCT GACGTGGATC TCTCCGGTAA 
CCAACTCTAC GGTACAATCC CACCGTCTCT AGGACGTATG TCGGTACTAG 
CCACACTTAA CCTCGACGGA AACAAAATCT CCGGCGAGAT ACCTCAAACT 
CTGATGACGT CGTCGGTGAT GAATCTGAAT TTGAGCCGGA ACTTGCTACA 
AGGGAAGATA CCTGAAGGGT TTGGACCAAG GTCTTACTTC ACAGTTCTTG 
ATTTGTCGTA TAATAATCTG AAAGGACCAA TACCGAGATC GATCTCAGGT 
GCGTCGTTTA TTGGTCATTT GGATCTTAGC CATAACCATC TCTGTGGGAG 
GATTCCGGTA GGTTCACCGT TTGATCATCT TGAAGCGGCG TCGTTTATGT 
TTAACGACTG TCTTTGTGGT AAACCTTTAA GAGCTTGCTT GAAAAATTGA 
TTTTTATATG TAATTTGAGT TTTTTCATTA GAGACATTAT TATATTTATG 
GTTATGCATT TTATAAAAAA AAGATTTAAA ATTGTATGCT ACGTTTAGTT 
GAATTATGGG ATGATTAACA AAATATATAA ACTTCCAAAA AAAAAAAAAA 
A

Gene models with high sequence identity

AT3G20820.1 [+] show detail - Leucine-rich repeat (LRR) family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	L domain-like	2.8e-71
HMMPfam	Leucine-rich repeat	0.89
HMMPfam	Leucine-rich repeat	0.24
HMMPfam	Leucine-rich repeat	0.32
HMMPfam	Leucine-rich repeat	0.26
HMMPfam	Leucine-rich repeat-containing N-terminal domain, type 2	0.00000000025
HMMPanther	LRR RECEPTOR-LIKE KINASE	5e-74
HMMPanther	SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE	5e-74
Gene3D	no description	4e-68
Gene3D	no description	0.0000005

See the detailed result >

AT3G20820.1

Model type: Protein coding
Short Description: Leucine-rich repeat (LRR) family protein
Computational Description: Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction, defense response; LOCATED IN: apoplast, cell wall, chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G12940.1); Has 70868 Blast hits to 23934 proteins in 998 species: Archae - 25; Bacteria - 4468; Metazoa - 12756; Fungi - 677; Plants - 48104; Viruses - 0; Other Eukaryotes - 4838 (source: NCBI BLink).
Link: InterPro Scan - TAIR