F29309

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29309

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29309

Determination of introduced cDNA(s)

  • RAFL09-50-L05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-50-L05 - Resource: pda06465

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-50-L05 - full reading
    AAGATTTATA TTCCTCTTAA AAAATAATTT ATTTCCTTCC TAAGAAGAAT 
    TATTAGATTT ATTTTCTTTG CTAGTATAGA TTGATGAAAG TGAGGAAATG
    GGAGAAGAAA TGAAGAACAC AGGATGTGTC TTCTTCTTCT AAGTCACTAA
    CAAAATCAAC AAAGAGGAGA AGCCATTATT ATATAATAGA GAGATTGAGA
    GAAGAGATTT ATCCAAAAAA ATATTGCAAT TCTTCTTGGA GTGAATAATG
    CCAGTCCCTC TTGCACCATA TCCAACACCT CCGGCACCGG CACTGGCTCC
    GTCGTACAAC ACTCCTCCGG CAAATGGAAG TACAAGTGGG CAGAGCCAGT
    TAGTGTGTTC AGGTTGCAGA AACCTTCTGA TGTATCCCGT CGGAGCAACC
    TCCGTCTGTT GCGCCGTCTG TAACGCCGTC ACGGCCGTTC CTCCGCCCGG
    AACGGAGATG GCACAGTTGG TATGTGGAGG ATGTCATACA CTCTTAATGT
    ACATTCGTGG AGCTACAAGT GTTCAATGTT CTTGTTGTCA CACTGTTAAT
    CTCGCCCTCG AAGCAAACCA AGTAGCGCAT GTGAATTGCG GAAACTGCAT
    GATGCTACTA ATGTATCAAT ATGGAGCAAG ATCAGTGAAA TGTGCCGTTT
    GTAACTTTGT CACATCTGTT GGGGGTTCAA CGAGCACGAC TGATTCGAAG
    TTTAACAATT AAAACTTGGA TCTATCTACC TATCAATACA TATTGAGTTA
    TGAGCAATAT AGAGGAAGCA TCAAATCTTT TTCACTCTCT CTTCGATCAA
    GAATCCGGCA GTGATGAGTT TGAAACCATT TTCGGAAGTA AATGAAATAT
    GTAATTCGTC GAAATTTCTG ACTTTGGTCT CTTTGTCCGT TTGTATAGAG
    CTATCTCTCT TCTTTGGTTT TTGTTTTGTT CTCTTAAGAA AAATTTGATT
    CACCAGTTTG TAAGAGTGAT TCAGAAATCA AAGCTAGACT TTTTATGCAT
    G

    Gene models with high sequence identity

    1. AT1G32540.2 [+] show detail - lsd one like 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Zinc finger, LSD1-type 1.2e-09
    HMMTigr Zinc finger, LSD1-type 3.7e-11
    HMMTigr Zinc finger, LSD1-type 1e-07
    HMMPfam Zinc finger, LSD1-type 3e-12
    HMMPfam Zinc finger, LSD1-type 2.4e-12
    HMMPfam Zinc finger, LSD1-type 2.8e-10

    See the detailed result >

    AT1G32540.2

    Model type
    Protein coding
    Short Description
    lsd one like 1
    Curator Summary
    Encodes a protein with 3 plant-specific zinc finger domains that acts as a positive regulator of cell death.
    Computational Description
    lsd one like 1 (LOL1); CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: LSD1 zinc finger family protein (TAIR:AT4G20380.7); Has 253 Blast hits to 202 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 202; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR