F29319

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29319

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29319

Determination of introduced cDNA(s)

  • RAFL04-16-I05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-16-I05 - Resource: pda00639

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-16-I05 - full reading 
    CTGATCAGAT GTGCCAGCTA TACAAAAGTC TCTCACGTCT CTCCCAGAAA 
    ACTCTTATTT TATCGCCGAG AAAGTGACGG AAAACGAAAT CCAAACGGGA 
    TAATAAACCT AAAACCTAAA TTAGTGATTT AGCTACGACT CCTAAAGATT 
    CAAATTTGGG TTACATCGGA CGAATCATGA CTCTGCTTCC GATTTCAATC 
    TTCTTCTTCT TTTTATTTTG CATTCCTTCG CCATTAATCG CCGCCGCTAA 
    CGATGACGAT ATACCGACGG CGTACACTCT CCTCCAAAGC TACAACTTTC 
    CCGTCGGGAT TCTTCCTAAA GGAGTGGTGT CATATGATTT AGATAAATCT 
    ACTGGTCAAT TCCACGCGTA TTTCAACAAA TCGTGCAGTT TCGCTCTTCA 
    AGGCTCTTAC CAATTGGATT ACAAATCGAC AATCTCTGGA TACATATCGG 
    AGAACAAGAT CACGAAGCTT ACCGGCGTGA AGGTGAAAGT TCTCTTCTTG 
    TGGCTCAACA TCGTTGAGGT TATTAGGAAC GGAGACGAAC TCGAGTTCTC 
    CGTTGGGATC ACATCGGCGA ACTTCGAGAT CGATGAGTTT TACGAGTCGC 
    CACAGTGTGG TTGCGGATTT GATTGCAAAA CGAAGACGAA GACTTTGGGA 
    AGAAACCCTT TTGTTTCTTC GGTTTAAAGG TTAAGACTTC TTATTGCAGA 
    ATCTGAACTC TTTGGATGAT TTATGTTCTT TCTCCAATCA TTTAATTTTT 
    CAATCAATGC TTTGTTTGTA TCTCTTCTTA GGATCGAACC GATAAGTTGT 
    ATTTATGAAC CGATCAGGAA TAAAACAGTG GTGGAAAAAG TTAATTCTTA 
    TGTCTAAGGA GAAGATTGGC ATGAATTTGA GTTTCGTATT GGCTGATCAA 
    TGGTTTGTGT GTTGCATTCG ACGAATGCTT ATGAATGTCT GTATGAAACG 
    TTAGATCTTT TGTC

    Gene models with high sequence identity

    1. AT1G02816.1 [+] show detail - Protein of unknown function, DUF538
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Protein of unknown function DUF538 5.6e-32
    HMMPfam Protein of unknown function DUF538 4.4e-40

    See the detailed result >

    AT1G02816.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function, DUF538
    Computational Description
    Protein of unknown function, DUF538; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT4G02370.1); Has 559 Blast hits to 558 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 558; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR