F29328

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small)
	fruit (PO:0009001)	abnormal (PATO:0000460) (Silique::Others)
	flower (PO:0009046)	abnormal (PATO:0000460) (Flower::Others)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)
T2
	cauline leaf (PO:0000013)	present in fewer numbers in organism (PATO:0001997) (Cauline leaf::Number::few)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide)
	fruit (PO:0009001)	abnormal (PATO:0000460) (Silique::Others)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29328

Determination of introduced cDNA(s)

RAFL02-08-F07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL02-08-F07 - Resource: pda00169

full reading [+] show sequence

AGAAGAAGAC ATGACAAGTG AAGTTCTTCA AACAATCTCA AGTGGATCAG 
GTTTTGCTCA GCCACAGAGC TCATCAACCC TGGATCATGA TGAATCTCTC 
ATCAATCCTC CTCTTGTTAA GAAAAAGAGA AATCTCCCTG GAAATCCTGA 
TCCGGAAGCT GAAGTGATAG CTTTATCCCC CACGACCTTG ATGGCTACGA 
ACCGGTTCCT ATGTGAGGTA TGTGGCAAAG GTTTCCAAAG AGACCAAAAC 
TTACAGCTTC ATCGGCGAGG ACATAATCTT CCATGGAAGT TGAAGCAGAG 
GACAAGCAAA GAAGTGAGAA AACGTGTCTA CGTTTGCCCC GAGAAGACAT 
GTGTCCACCA TCACTCCTCT AGAGCTCTAG GCGATCTCAC TGGAATCAAA 
AAGCATTTTT GCCGGAAACA CGGGGAGAAG AAGTGGACGT GCGAGAAATG 
TGCTAAGAGA TACGCAGTCC AATCTGATTG GAAAGCTCAT TCCAAGACTT 
GTGGTACTAG AGAGTACCGT TGCGATTGTG GCACCATTTT CTCAAGGCGA 
GACAGCTTTA TCACTCATAG AGCTTTCTGC GATGCCTTAG CGGAAGAAAC 
CGCTAAGATA AACGCAGTGT CTCATCTCAA CGGTTTAGCC GCGGCTGGAG 
CCCCAGGATC AGTTAATCTC AACTATCAAT ATCTCATGGG AACATTCATC 
CCACCGCTTC AACCATTTGT ACCACAACCG CAAACAAATC CAAACCATCA 
TCATCAACAT TTTCAGCCAC CAACTTCTTC GTCGCTCTCT CTATGGATGG 
GACAAGATAT CGCGCCGCCT CAACCGCAAC CGGACTACGA TTGGGTTTTT 
GGAAACGCTA AGGCAGCGTC TGCTTGCATT GATAATAATA ATACTCACGA 
TGAGCAGATT ACGCAAAACG CAAACGCAAG TTTGACCACT ACCACTACTC 
TCTCTGCCCC TTCTTTATTC AGCAGCGACC AACCACAAAA CGCAAACGCA 
AATTCAAACG TGAATATGTC CGCGACAGCT TTACTACAGA AAGCTGCTGA 
AATTGGCGCT ACTTCTACAA CAACCGCAGC GACCAATGAC CCATCAACGT 
TTCTTCAAAG TTTCCCGCTT AAATCCACCG ATCAAACCAC CAGTTATGAC 
AGTGGCGAAA AGTTTTTTGC TTTGTTCGGG TCTAACAACA ACATTGGGTT 
AATGAGTCGT AGTCATGATC ATCAAGAGAT CGAGAACGCT AGAAATGACG 
TTACGGTTGC GTCTGCCTTG GATGAATTAC AGAATTACCC TTGGAAACGT 
AGAAGAGTTG ATGGTGGAGG TGAAGTGGGT GGAGGAGGGC AAACTCGGGA 
TTTCCTCGGG GTTGGTGTAC AAACGTTGTG CCATCCATCG TCTATCAATG 
GATGGATTTG AAAGAGTTTA AAAATTTCGG GGTTAATGCA TAAATTACGT 
AAAAGAAGAA GGAATCTTTT GTCATTTCCA CCATTTTCTA AGATAACATA 
TGTATATGGT AATGGAAGTT GTTTTCTTTT ATT

Gene models with high sequence identity

AT5G44160.1 [+] show detail - C2H2-like zinc finger protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	C2H2 and C2HC zinc fingers	0.000051
superfamily	C2H2 and C2HC zinc fingers	0.00015
ProfileScan	Zinc finger, C2H2-type	11.51
HMMPanther	UNCHARACTERIZED	0.00000000017
HMMPanther	SERINE/THREONINE-PROTEIN KINASE RIO	0.00000000017
PatternScan	Zinc finger, C2H2-type	0

See the detailed result >

AT5G44160.1

Model type: Protein coding
Short Description: C2H2-like zinc finger protein
Computational Description: nutcracker (NUC); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: primary root apical meristem, stem vascular system, embryo, root, embryonic root; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT1G03840.1); Has 52823 Blast hits to 19358 proteins in 362 species: Archae - 0; Bacteria - 0; Metazoa - 50211; Fungi - 300; Plants - 764; Viruses - 0; Other Eukaryotes - 1548 (source: NCBI BLink).
Link: InterPro Scan - TAIR