F29335

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29335

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29335

Determination of introduced cDNA(s)

  • RAFL04-13-C05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-13-C05 - Resource: pda16963

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-13-C05 - full reading 
    GAATCTGCCT TCAATGGCTT CTTCAGCAGC AGCCATCGTC TCCGGTTCTC 
    CATTTCGTTC TTCACCATTA ATCCATAACC ATCATGCTTC TCGTTATGCT 
    CCTGGATCCA TCTCCGTCGT ATCTCTCCCC CGTCAAGTTT CCCGCCGTGG 
    CCTCTCCGTT AAATCGGGGT TGATCGAGCC AGACGGAGGA AAACTCATGA 
    ACCTCGTAGT CGAAGAATCA CGGCGGCGCG TGATGAAACA CGAGGCGGAG 
    ACGGTTCCGG CAAGGATCAA GCTGAACCGT GTGGATCTAG AGTGGGTACA 
    TGTGCTTAGC GAAGGCTGGG CAAGTCCTCT CAAAGGTTTC ATGAGACAGT 
    CAGAGTTCCT CCAAACACTT CATTTTAACT CGTTCCGGCT CGAAGACGGC 
    TCCGTCGTCA ACATGTCGGT TCCGATCGTC CTCGCTATCG ACGACGATCA 
    GAAGTTTCGT ATCGGGGATT CCAACCAAGT CACACTCGTT GACTCGGTTG 
    GTAATCCCAT CGCGATTCTC AACGAGATTG AGATTTACAA GCATCCCAAA 
    GAAGAACGAA TCGCGAGAAC ATGGGGAACC ACGGCTCGTG GGCTTCCTTA 
    TGCGGAAGAA GCAATCACCA AAGCTGGAAA CTGGTTGATT GGAGGTGATT 
    TACAAGTTTT GGAGCCGATC AAGTACAATG ATGGTTTAGA CCGGTTTCGT 
    TTATCTCCGT CGCAGCTGCG GGAGGAGTTT ATAAGGCGCG GTGCGGACGC 
    GGTTTTCGCG TTCCAGCTTA GGAACCCGGT GCATAATGGT CATGCGCTTC 
    TTATGACGGA TACTCGTAGA AGACTTCTTG AGATGGGTTA CAAAAACCCT 
    GTCTTGTTGT TGAATCCACT TGGTGGGTTT ACTAAGGCTG ATGATGTACC 
    TCTCAGCTGG CGTATGAGAC AGCACGAGAA GGTGTTGGAG GATGGTGTAC 
    TGGATCCAGA GACCACTGTA GTCTCTATCT TCCCATCTCC GATGCTATAC 
    GCTGGCCCAA CTGAGGTTCA ATGGCATGCC AAAGCTAGGA TCAACGCGGG 
    AGCTAATTTC TACATTGTTG GTCGCGATCC TGCCGGTATG GGCCATCCGA 
    CAGAGAAGAG AGATCTTTAT GATGCCGATC ACGGGAAGAA AGTGCTTAGC 
    ATGGCACCAG GACTTGAACG CCTCAACATT CTACCCTTCA AGGTCGCTGC 
    ATATGACAAA ACTCAGGGGA AAATGGCCTT CTTTGATCCT TCCAGGTCTC 
    AAGACTTCCT CTTCATATCA GGAACCAAGA TGCGTGGGTT GGCGAAGAAG 
    AAAGAGAACC CACCAGATGG TTTCATGTGT CCCTCTGGTT GGAAGGTGTT 
    GGTTGACTAC TACGACAGTC TCAGTGCAGA GACTGGTAAT GGAAGGGTTT 
    CAGAAGCTGT TGCTTCTGCT TGAATGCAAA AGGTTTCCTT GTCCCACAAG 
    ATTCACATTT CCTGTTTGTT AGTAACTAAA CTCCGTGACA AAAAGCTTCC 
    AATAAAACCA ATGTAACATC TGTGTGTTCT TTGCGTCTCT GTTGTCAAAC 
    TTGTCGTCGA GTCGCATCGA TTTGTACCAT ATTTGCTTAT TGTGTTTTAA 
    ATGTAACAAC ATTTGTGTAT GAAAAAAAAA A

    Gene models with high sequence identity

    1. AT5G43780.1 [+] show detail - Pseudouridine synthase/archaeosine transglycosylase-like family protein
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.4e-50
    Gene3D Rossmann-like alpha/beta/alpha sandwich fold 5.1e-67
    superfamily Nucleotidylyl transferase 8.7e-75
    superfamily Pseudouridine synthase/archaeosine transglycosylase-like 5.2e-46
    HMMPanther SULFATE ADENYLYLTRANSFERASE 1.9e-179
    HMMPanther ADENYLSULFATE KINASE/SULFATE ADENYLTRANSFERAS 1.9e-179
    HMMTigr Sulphate adenylyltransferase 3.5e-198
    HMMPfam Sulphate adenylyltransferase 5.9e-85

    See the detailed result >

    AT5G43780.1

    Model type
    Protein coding
    Short Description
    Pseudouridine synthase/archaeosine transglycosylase-like family protein
    Curator Summary
    sulfate adenylyltransferase, ATP sulfurylase
    Computational Description
    APS4; FUNCTIONS IN: sulfate adenylyltransferase (ATP) activity; INVOLVED IN: sulfate assimilation; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Sulphate adenylyltransferase (InterPro:IPR002650); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase/archaeosine transglycosylase-like family protein (TAIR:AT4G14680.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR