F29337

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29337

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29337

Determination of introduced cDNA(s)

RAFL02-07-B18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL02-07-B18 - Resource: pda02242

full reading [+] show sequence

TGCCAACACT CAAACTCAAC TGCTCTCCCA TAACCGAAAC CGAGAGAAAA 
TATAGAAAAA GATGATTGAG ACGGTTAAAC ACCTGATCGG CTCCGGTGGT 
CCCAGCGGAT TCGGGTCAAG ATCCACCGCC GATCATGTCA CTTGTAATTC 
TGATCTCCGT TCTCTAACTG CCATCATCAC TGGCGCGACG TCGGGGATAG 
GAGCTGAGAC GGCGCGTGTT CTTGCTAAGC GTGGCGCAAG ACTTGTGCTT 
CCGGCTAGAA GCGTCAAAAC CGCCGAGGAA ACAAAGGCTC GTATACTGTC 
GGAGTTTCCT GATGCGGAGA TCATCGTTAT GCATCTTGAT CTCAGCTCAC 
TTACCTCTGT TCGTCGATTC GTGGACGATT TCGAATCTCT CAATCTCCCA 
CTCAACATCC TCATAAACAA TGCTGGGAAA TATGCGCATA AGCATGCCCT 
CTCTGAGGAC GGTGTGGAGA TGACCTTCGC TACTAATTAT CTCGGCCATT 
TTCTGCTGAC TAAACTGCTG TTAAAGAAGA TGATTGAAAC GGCGGCACAA 
ACCGGCGTGC AAGGCCGTAT CGTCAACGTC ACGTCCGTCG TCCATAGCTG 
GTTTTCCGGT GATATGTTGC AATATCTCGC CGATATCTCA CGAAACAATA 
GAAATTACGA CGCGACTCGA GCCTACGCTC TCTCCAAGCT CGCCAACGTG 
CTCCACACTG TTGAGCTATC ACGGCTTCTC CATAAAATGG ATGCGAATGT 
GACGGCCAAT TGTGTTCATC CTGGTATCGT GAAAACCCGT CTCACAAGAG 
ATCGAGAAGG CGTCGTCACT GATTTAGTGT TTTTCTTGAC ATCCAAGCTA 
TTGAAGTCTG TTCCTCAGGC AGCAGCTACG ACATGTTACG TGGCAACAAG 
TCCAAGATTG AGGAACGTGT GTGGCAAGTA CTTCTCCGAC TGCAACGAAG 
CTAGGTCATC TAAATCCGGG TCATGCAATC TCAAAGCTCA GAGACTCTGG 
ACTGCTTCTG ACTTGTTGGT TTCTCCACCT AATTCCACTA CCAATCTTTC 
TCATACCTCC TTTTAACCAA CAAACCATCC TAGCTATTTT CTACGTGTAA 
ATCTTAAGCC CTATATATAG TAATATAATT AGCTTTATAA TATATATAGT 
TATAGAAATA TATACTATAG ATGAAATGGG ATGTGTGTGT GTAGTTGTGT 
TACGTGTGCA TATAGCAAGC CTCCCTATAT TTAATATGTG GTTATGGTTT 
GACATTATTG CTAATATATA TATATATATA TATTACTTAG CTTGTAGGGT 
TTTGTAATCC TAGCTAGCTA GGTCCTTGTT ATGTAATATA TACATATATC 
AATCAAAAAC ATCACAGAAT TTCAT

Gene models with high sequence identity

AT1G64590.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	NAD(P)-binding domain	6e-53
HMMPanther	RETINOL DEHYDROGENASE	2.1e-121
HMMPanther	Short-chain dehydrogenase/reductase SDR	2.1e-121
Gene3D	NAD(P)-binding domain	1.9e-51
HMMPfam	Short-chain dehydrogenase/reductase SDR	5.2e-22
FPrintScan	Glucose/ribitol dehydrogenase	4.4e-16
FPrintScan	Glucose/ribitol dehydrogenase	4.4e-16
FPrintScan	Glucose/ribitol dehydrogenase	4.4e-16
FPrintScan	Glucose/ribitol dehydrogenase	4.4e-16

See the detailed result >

AT1G64590.1

Model type: Protein coding
Short Description: NAD(P)-binding Rossmann-fold superfamily protein
Computational Description: NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G24050.1); Has 62352 Blast hits to 62301 proteins in 3130 species: Archae - 564; Bacteria - 41137; Metazoa - 4183; Fungi - 3748; Plants - 2129; Viruses - 0; Other Eukaryotes - 10591 (source: NCBI BLink).
Link: InterPro Scan - TAIR