F29411

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29411

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29411

Determination of introduced cDNA(s)

  • RAFL02-09-P08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL02-09-P08 - Resource: pda02263

    full reading [+] show sequence

    Nucleotide sequence: RAFL02-09-P08 - full reading 
    AGTTAAAAGG AAAAAAAAAA AAAATTCTTT GAGATGAGAC TTGTTCTCTC 
    TGGTGCCTCT TCTTTCACCT CCAACCTTTT TTGTTCCTCC CAACAGGTCA 
    ATGGAAGAGG AAAAGAACTG AAAAACCCAA TTTCTCTAAA CCACAACAAA 
    GATTTGGACT TTCTGTTAAA GAAGTTAGCT CCGCCACTCA CGGCGGTTTT 
    ACTTGCTGTT TCACCCATCT GTTTCCCTCC AGAATCTCTT GGGCAGACTT 
    TGGATATACA GAGAGGAGCT ACATTGTTTA ATAGAGCTTG TATCGGGTGT 
    CATGATACAG GTGGAAACAT TATTCAACCT GGTGCAACGC TTTTCACAAA 
    AGACCTCGAA AGAAATGGAG TTGATACTGA GGAAGAAATA TATCGTGTTA 
    CCTACTTTGG AAAGGGAAGA ATGCCGGGAT TTGGTGAGAA ATGCACACCG 
    AGAGGACAAT GTACCTTTGG ACCGCGGTTG CAGGACGAAG AAATCAAGCT 
    TCTCGCTGAA TTTGTAAAGT TTCAAGCTGA CCAAGGCTGG CCAACTGTAT 
    CTACGGACTA GCGACTAGGC ATTCTTCGTC TTGTGAGCGT TTTTGTAATC 
    CAATTAATCC ATAGGGCTGT ATCTACTTAC ACTTATAACA ATTCCTTCTG 
    GGAGGTTTCA TTGCAATTGC TTATGCTCC

    Gene models with high sequence identity

    1. AT5G45040.1 [+] show detail - Cytochrome c
      E-value: 0; Score: 99.85

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Cytochrome c domain 5.2e-17
    ProfileScan Cytochrome c domain 11.262
    Gene3D Cytochrome c domain 0.000000000000041
    HMMPfam Cytochrome c, class I 0.0000022

    See the detailed result >

    AT5G45040.1

    Model type
    Protein coding
    Short Description
    Cytochrome c
    Computational Description
    Cytochrome c; FUNCTIONS IN: electron carrier activity, iron ion binding, heme binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c, class I (InterPro:IPR003088), Cytochrome c domain (InterPro:IPR009056); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR