F29437

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29437

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29437

Determination of introduced cDNA(s)

  • RAFL06-82-P06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-82-P06 - Resource: pda03841

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-82-P06 - full reading 
    ACCCATCAAG TCCCAATTCC CAACACTGTC ACTCAAAAAG AATCTTCAAA 
    CAATGAATCT CAACGTCGTC GTTTTACTCC TACTCCTTCT AATCTCATCC 
    GCCACGTGTT GTCCGCCGTC AGACCGCCGT GCACTTCTAG CTTTCCGATC 
    AGCTCTTCAC GAGCCTTACC TCGGCATTTT CAACTCATGG ACAGGCCAAG 
    ACTGTTGCCA CAACTGGTAC GGTATTAGCT GCGACTCGCT CACTCACCGA 
    GTCGCCGACA TAAATCTCCG CGGCGAGTCA GAAGATCCAA TCTTCGAACG 
    AGCTCACCGA ACCGGTTACA TGACCGGACA CATCTCCGCC TCGATATGTG 
    AGCTCACTCG TCTCTCCGCC ATTACAATCG CCGATTGGAA AGGTATCTCC 
    GGCGAAATCC CTAAATGTAT CACTCGTCTT CCTTTTCTCC GTACACTCGA 
    CTTAATCGGA AACCAAATCT CCGGTGGGAT TCCATACGAC ATCGGAAGAT 
    TAAACCGGTT AGCTGTTTTA AACGTAGCCG ATAACCGAAT CTCCGGTTCA 
    ATTCCAAAAT CATTAACCAA TCTCTCTAGC TTAATGCATT TAGATCTCCG 
    TAACAACTTA ATCTCCGGTG TAATCCCGTC GGACGTCGGA AGATTAAAAA 
    TGCTCAGCCG TGCGTTATTA TCCGGTAACC GAATAACCGG TCGGATCCCA 
    GAATCATTAA CCAATATCTA CCGGTTAGCT GACGTGGATC TCTCCGGTAA 
    CCAACTCTAC GGTACAATCC CACCGTCTCT AGGACGTATG TCGGTACTAG 
    CCACACTTAA CCTCGACGGA AACAAAATCT CCGGCGAGAT ACCTCAAACT 
    CTGATGACGT CGTCGGTGAT GAATCTGAAT TTGAGCCGGA ACTTGCTACA 
    AGGGAAGATA CCTGAAGGGT TTGGACCAAG GTCTTACTTC ACAGTTCTTG 
    ATTTGTCGTA TAATAATCTG AAAGGACCAA TACCGAGATC GATCTCAGGT 
    GCGTCGTTTA TTGGTCATTT GGATCTTAGC CATAACCATC TCTGTGGGAG 
    GATTCCGGTA GGTTCACCGT TTGATCATCT TGAAGCGGCG TCGTTTATGT 
    TTAACGACTG TCTTTGTGGT AAACCTTTAA GAGCTTGCTT GAAAAATTGA 
    TTTTTATATG TAATTTGAGT TTTTTCATTA GAGACATTAT TATATTTATG 
    GTTATGCATT TTATAAAAAA AAGATTTAAA ATTGTATGCT ACGTTTAGTT 
    GAATTATGGG ATGATTAACA AAATATATAA ACTTCCAAAA AAAAAAAAAA 
    A

    Gene models with high sequence identity

    1. AT3G20820.1 [+] show detail - Leucine-rich repeat (LRR) family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily L domain-like 2.8e-71
    HMMPfam Leucine-rich repeat 0.89
    HMMPfam Leucine-rich repeat 0.24
    HMMPfam Leucine-rich repeat 0.32
    HMMPfam Leucine-rich repeat 0.26
    HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 2.5e-10
    HMMPanther LRR RECEPTOR-LIKE KINASE 5e-74
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 5e-74
    Gene3D no description 4e-68
    Gene3D no description 5e-07

    See the detailed result >

    AT3G20820.1

    Model type
    Protein coding
    Short Description
    Leucine-rich repeat (LRR) family protein
    Computational Description
    Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction, defense response; LOCATED IN: apoplast, cell wall, chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G12940.1); Has 70868 Blast hits to 23934 proteins in 998 species: Archae - 25; Bacteria - 4468; Metazoa - 12756; Fungi - 677; Plants - 48104; Viruses - 0; Other Eukaryotes - 4838 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR