F29531

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29531

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
T2  
cauline leaf (PO:0000013)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29531

Determination of introduced cDNA(s)

  • RAFL11-03-J07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL11-03-J07 - Resource: pda10062

    full reading [+] show sequence

    Nucleotide sequence: RAFL11-03-J07 - full reading 
    AAAAAAATCT CCACCGCTCT GAGAGAAAAA AGTTGGAAGA GGAGAGAGAG 
    AGAGAGCGAC AACGCACCAA CTGTTGCGGC TCAAAGAGAT CTCGATCGGG 
    ATCCACAAGA CGGAGATAGA TAGAGAGAGA GTGAGAGCTA ACGGAAATGG 
    GATCTCAGCT ACTTGAGTGT TGCTTCCGTT TCGTCTTCTA CTGTCACTCC 
    CACAGCTCCA ACTGTTTTCC TTGATTGTTT TTCTTTTATC TCGGCGTTTT 
    ACTCGGAAGC TTACAACACA CTCTCTCAGG GATTTGAAAT CCTCACGTTT 
    CAGCACATTC TTTGTGGTTC CCATCTATTC TCTAGCCAGT TCGGAGTTGC 
    CTGAAGAAAT CAAATGGGTT CGAGATACGC ATCTCACCAG CTCAGCAATG 
    GGCTTTTTGT GTCTGGCCGG CCAGAGCAAC CCAAAGAAAA GCCTCCAACA 
    ATGAGCTCAG TAGCCATGCC ATACACCGGT GGTGATATCA AGAAATCAGG 
    AGAATTGGGG AAGATGTTTG ACATTCCGAC TGATGGGACT AAGTCAAGGA 
    AGTCTGGCCC CATAACCGGA GGATCGTCAA GAAGTGGTGC GCAATCAGGT 
    CCAGTGCCTA ATGCAACTGG TCGTATGTCT GGCAATTTAG CTTCTGCTGG 
    TTCAAATTCA ATGAAGAAAA CAAATTCTGG GCCTTTGTCT AAGCATGGGG 
    AGCCTTTAAA GAAATCCTCT GGTCCGCAAT CCGGTGGTGT AACAAGGCAA 
    AATTCCGGCC CTATTCCTAT ACTCCCAACT ACAGGTCTCA TAACATCTGG 
    GCCAATTACC TCGGGGCCTC TAAATTCATC TGGGGCTCCT AGGAAAATTT 
    CTGGTCCTCT AGACTATTCT GGTTCGATGA AGACACATAT GCCTTCAGTT 
    GTCCACAACC AGGCGGTAAC TACCCTTGCT CCGGAAGATG ACTTTTCCTG 
    CATGAAAAGC TTCCCCAAGC CTGTGCTGTG GCTGGTTATA CTTATATTTG 
    TGATGGGGTT CCTCGCTGGA GGCTTCATTC TTGGAGCAGT TCACAATGCA 
    ATTCTCCTCA TAGTTGTGGC GGTCTTGTTC ACAGTTGTTG CTGCACTTTT 
    CATTTGGAAT ATTTCTTGTG AAAGACGTGG TATCACAGAT TTCATCGCTC 
    GTTATCCGGA TGCTGATCTT AGAACTGCCA AAAACGGTCA ATATGTGAAG 
    GTCACTGGGG TGGTCACCTG TGGTAACGTG CCTCTTGAAT CATCCTTCCA 
    TAGAGTTCCT AGGTGTGTTT ACACGTCTAC TTGTCTATAT GAGTACCGTG 
    GATGGGGTTC AAAGCCAGCC AATGCTTCAC ATCGTCGCTT TACATGGGGA 
    CTGAGATCAG CAGAGAGGCA TGTGGTAGAC TTCTACATTT CTGATTTCCA 
    ATCTGGGCTC AGGGCATTGG TCAAAACTGG AAACGGTGCA AAGGTAACAC 
    CGCTTGTCGA TGATTCTGTT GTCATCGATT TTAAGCCAGG AAATGAGCAA 
    GCCTCTCCAG ACTTTGTAAG GTGGTTGGGT AAAAAGAATC TAACCAATGA 
    TGATCGAATA ATGCGGCTTA AAGAAGGGTA TATCAAAGAA GGAAGCACAG 
    TAAGTGTGAT TGGAGTGGTT CAGAGAAACG ATAACGTGTT AATGATAGTC 
    CCGACGACAG AACCATTAGC AGCTGGTTGG CAATGGAGTA AGTGCACATT 
    CCCTGCAAGT CTTGAAGGAA TTGTATTGAG ATGCGAAGAT TCATCGAACG 
    TAGATGCAAT TCCTGTCTGA TGCAGTAGTA GTGGAAGTCT TTCTTTTCCT 
    TCTTCTTCCA CGGTTGGTAG ACGAAAATTT CACTGCTCCA CTTCGGCTTC 
    ATTAATATTT TTCATGAAAT CTGAAATGTG TTCTTGGTTG GTGGCCTTTT 
    CGCTCTCTAC TGATGATGAT TCCTTTGGTT GGTGGTTTAT GGTAGTGTTT 
    TCTTTTTCTT CTCTCTTTTA ATATTTCTTA TTTTTTATAT CGAGTTATTA 
    TTACATTAGG ATGATAATGA TGATGATGGA TGTGGATTTC TTTTCTACAA 
    CTTAATTTGT GTTGTGGGCA CTCTTCTTTG CCTTATGGTT TGTAATTTGT 
    AAAGCTCTGC TAGTTATTCT TTTTTCGACC TAATTTGTGA TCTAATGTAA 
    TGGGGATTAT CTTTTT

    Gene models with high sequence identity

    1. AT1G78882.1 [+] show detail - conserved peptide upstream open reading frame 56
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther UBIQUITIN SPECIFIC PROTEASE UBPY-RELATED 9.9e-129
    HMMPanther UBIQUITIN SPECIFIC PROTEASE FAMILY C19-RELAT 9.9e-129

    See the detailed result >

    AT1G78882.1

    Model type
    Protein coding
    Short Description
    conserved peptide upstream open reading frame 56
    Curator Summary
    Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF56 represents a conserved upstream opening reading frame relative to major ORF AT1G78880.1
    Computational Description
    conserved peptide upstream open reading frame 56 (CPuORF56); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR