F29531

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29531

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
T2  
cauline leaf (PO:0000013)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29531

Determination of introduced cDNA(s)

  • RAFL11-03-J07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL11-03-J07 - Resource: pda10062

    full reading [+] show sequence

    Nucleotide sequence: RAFL11-03-J07 - full reading
    AAAAAAATCT CCACCGCTCT GAGAGAAAAA AGTTGGAAGA GGAGAGAGAG 
    AGAGAGCGAC AACGCACCAA CTGTTGCGGC TCAAAGAGAT CTCGATCGGG
    ATCCACAAGA CGGAGATAGA TAGAGAGAGA GTGAGAGCTA ACGGAAATGG
    GATCTCAGCT ACTTGAGTGT TGCTTCCGTT TCGTCTTCTA CTGTCACTCC
    CACAGCTCCA ACTGTTTTCC TTGATTGTTT TTCTTTTATC TCGGCGTTTT
    ACTCGGAAGC TTACAACACA CTCTCTCAGG GATTTGAAAT CCTCACGTTT
    CAGCACATTC TTTGTGGTTC CCATCTATTC TCTAGCCAGT TCGGAGTTGC
    CTGAAGAAAT CAAATGGGTT CGAGATACGC ATCTCACCAG CTCAGCAATG
    GGCTTTTTGT GTCTGGCCGG CCAGAGCAAC CCAAAGAAAA GCCTCCAACA
    ATGAGCTCAG TAGCCATGCC ATACACCGGT GGTGATATCA AGAAATCAGG
    AGAATTGGGG AAGATGTTTG ACATTCCGAC TGATGGGACT AAGTCAAGGA
    AGTCTGGCCC CATAACCGGA GGATCGTCAA GAAGTGGTGC GCAATCAGGT
    CCAGTGCCTA ATGCAACTGG TCGTATGTCT GGCAATTTAG CTTCTGCTGG
    TTCAAATTCA ATGAAGAAAA CAAATTCTGG GCCTTTGTCT AAGCATGGGG
    AGCCTTTAAA GAAATCCTCT GGTCCGCAAT CCGGTGGTGT AACAAGGCAA
    AATTCCGGCC CTATTCCTAT ACTCCCAACT ACAGGTCTCA TAACATCTGG
    GCCAATTACC TCGGGGCCTC TAAATTCATC TGGGGCTCCT AGGAAAATTT
    CTGGTCCTCT AGACTATTCT GGTTCGATGA AGACACATAT GCCTTCAGTT
    GTCCACAACC AGGCGGTAAC TACCCTTGCT CCGGAAGATG ACTTTTCCTG
    CATGAAAAGC TTCCCCAAGC CTGTGCTGTG GCTGGTTATA CTTATATTTG
    TGATGGGGTT CCTCGCTGGA GGCTTCATTC TTGGAGCAGT TCACAATGCA
    ATTCTCCTCA TAGTTGTGGC GGTCTTGTTC ACAGTTGTTG CTGCACTTTT
    CATTTGGAAT ATTTCTTGTG AAAGACGTGG TATCACAGAT TTCATCGCTC
    GTTATCCGGA TGCTGATCTT AGAACTGCCA AAAACGGTCA ATATGTGAAG
    GTCACTGGGG TGGTCACCTG TGGTAACGTG CCTCTTGAAT CATCCTTCCA
    TAGAGTTCCT AGGTGTGTTT ACACGTCTAC TTGTCTATAT GAGTACCGTG
    GATGGGGTTC AAAGCCAGCC AATGCTTCAC ATCGTCGCTT TACATGGGGA
    CTGAGATCAG CAGAGAGGCA TGTGGTAGAC TTCTACATTT CTGATTTCCA
    ATCTGGGCTC AGGGCATTGG TCAAAACTGG AAACGGTGCA AAGGTAACAC
    CGCTTGTCGA TGATTCTGTT GTCATCGATT TTAAGCCAGG AAATGAGCAA
    GCCTCTCCAG ACTTTGTAAG GTGGTTGGGT AAAAAGAATC TAACCAATGA
    TGATCGAATA ATGCGGCTTA AAGAAGGGTA TATCAAAGAA GGAAGCACAG
    TAAGTGTGAT TGGAGTGGTT CAGAGAAACG ATAACGTGTT AATGATAGTC
    CCGACGACAG AACCATTAGC AGCTGGTTGG CAATGGAGTA AGTGCACATT
    CCCTGCAAGT CTTGAAGGAA TTGTATTGAG ATGCGAAGAT TCATCGAACG
    TAGATGCAAT TCCTGTCTGA TGCAGTAGTA GTGGAAGTCT TTCTTTTCCT
    TCTTCTTCCA CGGTTGGTAG ACGAAAATTT CACTGCTCCA CTTCGGCTTC
    ATTAATATTT TTCATGAAAT CTGAAATGTG TTCTTGGTTG GTGGCCTTTT
    CGCTCTCTAC TGATGATGAT TCCTTTGGTT GGTGGTTTAT GGTAGTGTTT
    TCTTTTTCTT CTCTCTTTTA ATATTTCTTA TTTTTTATAT CGAGTTATTA
    TTACATTAGG ATGATAATGA TGATGATGGA TGTGGATTTC TTTTCTACAA
    CTTAATTTGT GTTGTGGGCA CTCTTCTTTG CCTTATGGTT TGTAATTTGT
    AAAGCTCTGC TAGTTATTCT TTTTTCGACC TAATTTGTGA TCTAATGTAA
    TGGGGATTAT CTTTTT

    Gene models with high sequence identity

    1. AT1G78882.1 [+] show detail - conserved peptide upstream open reading frame 56
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther UBIQUITIN SPECIFIC PROTEASE UBPY-RELATED 9.9e-129
    HMMPanther UBIQUITIN SPECIFIC PROTEASE FAMILY C19-RELAT 9.9e-129

    See the detailed result >

    AT1G78882.1

    Model type
    Protein coding
    Short Description
    conserved peptide upstream open reading frame 56
    Curator Summary
    Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF56 represents a conserved upstream opening reading frame relative to major ORF AT1G78880.1
    Computational Description
    conserved peptide upstream open reading frame 56 (CPuORF56); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR